Why shouldn't a proton‑pump inhibitor be co‑prescribed with antibiotics in otherwise healthy children without a documented acid‑related disorder such as gastro‑oesophageal reflux disease or peptic ulcer?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: February 21, 2026View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Why PPIs Should Not Be Co-Prescribed with Antibiotics in Healthy Children

Proton pump inhibitors should not be routinely prescribed alongside antibiotics in otherwise healthy children because PPIs are only indicated for documented acid-related disorders (GERD, peptic ulcer disease), not for antibiotic-related gastrointestinal side effects, and their use significantly increases the risk of serious infections in young children. 1, 2

Core Principle: PPIs Require Specific Indications

  • PPIs are explicitly indicated only for patients with diagnosed gastroesophageal reflux disease (GERD), not for uncomplicated physiologic gastroesophageal reflux or prophylactic gastrointestinal protection 1
  • Lifestyle changes should be emphasized as first-line therapy for both GER and GERD before considering any medication 1
  • There is no evidence-based indication for using PPIs to prevent antibiotic-associated gastrointestinal symptoms in children 1

Significant Safety Concerns in Pediatric Populations

Infection Risk Profile

The most compelling reason to avoid unnecessary PPI use is the substantially elevated infection risk:

  • PPI use is associated with a 34% increased risk of serious infections overall in young children (adjusted HR 1.34,95% CI 1.32-1.36) 2

  • Specific infection risks include:

    • Digestive tract infections: 52% increased risk (aHR 1.52) 2
    • Ear, nose, and throat infections: 47% increased risk (aHR 1.47) 2
    • Lower respiratory tract infections: 22% increased risk (aHR 1.22) 2
    • Bacterial infections: 56% increased risk (aHR 1.56) 2
    • Viral infections: 30% increased risk (aHR 1.30) 2
  • Evidence suggests acid suppression with PPIs may be a risk factor for community-acquired pneumonia, gastroenteritis, and candidemia 1

  • In preterm infants, PPIs may increase the risk of necrotizing enterocolitis 1

Mechanism of Harm

  • PPIs alter the microbiota and may have direct immunosuppressive effects, making children more vulnerable to infections during antibiotic therapy when microbial balance is already disrupted 2
  • The combination of antibiotics (which disrupt normal flora) and PPIs (which reduce gastric acid barrier and alter immunity) creates a particularly high-risk scenario 2

Clinical Decision Algorithm

Step 1: Assess for Documented Acid-Related Disorder

  • Does the child have confirmed GERD with gastrointestinal symptoms (recurrent regurgitation, dystonic neck posturing in infants, heartburn/epigastric pain in older children)? 3
  • Does the child have documented peptic ulcer disease or erosive esophagitis? 3
  • If NO to both: Do not prescribe PPIs 3, 1

Step 2: If Acid-Related Disorder Present

  • Treatment for GERD should not be used when there are no GI clinical features of GERD (Grade 1B recommendation) 3
  • For children with confirmed GERD, start with lifestyle modifications first 1
  • Consider PPI therapy only after conservative measures fail, for 4-8 weeks maximum, with mandatory reevaluation 1

Step 3: Antibiotic Co-Administration

  • If a child requires antibiotics and has no documented acid-related disorder: prescribe antibiotics alone 1
  • If a child has pre-existing, documented GERD already on PPI therapy and requires antibiotics: continue existing PPI regimen only 1
  • Never initiate PPIs prophylactically with antibiotics in children without documented acid-related pathology 1

Evidence Quality and Strength

  • The recommendation against PPI use without documented GERD is a Grade 1B (strong recommendation, moderate quality evidence) from the American College of Chest Physicians 3
  • The 2023 nationwide French cohort study of over 1.2 million children provides robust evidence of infection risks, with median follow-up of 3.8 years 2
  • Multiple guideline societies (American Academy of Pediatrics, American Academy of Family Physicians, American College of Chest Physicians) consistently recommend against empiric PPI use 1

Common Pitfalls to Avoid

  • Overprescription is rampant: Studies show PPIs are prescribed for 11% of hospitalized children, with only 34.5% compliance with recommendations 4
  • Misdiagnosis of normal infant reflux as GERD: PPIs are not effective in reducing GERD symptoms in infants and should not be used for physiologic reflux 5, 1
  • Prophylactic use misconception: There is no evidence supporting PPI use to prevent antibiotic-associated gastrointestinal symptoms 1
  • Duration errors: If PPIs are indicated, treatment should not exceed 8-12 weeks without re-evaluation 1

Special Considerations

  • For infants under 1 year: PPIs are particularly ineffective for symptom reduction and carry disproportionate infection risks 5, 2
  • Serious adverse events, particularly lower respiratory tract infections, were significantly higher in PPI-treated infants compared to controls 1
  • The American Academy of Pediatrics specifically recommends against using PPIs for infants with symptomatic GERD aged one month to less than one year 1

References

Guideline

Proton Pump Inhibitors in Pediatric Patients: Indications and Contraindications

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Proton pump inhibitors are still overprescribed for hospitalized children.

Archives de pediatrie : organe officiel de la Societe francaise de pediatrie, 2022

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.