In a pregnant patient with a positive hCG, urinalysis showing pyuria, hematuria, many squamous epithelial cells, and a urine culture indicating contamination, what is the appropriate next step?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: February 23, 2026View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Recommended Next Step in Pregnant Patient with Contaminated Urine Culture

Obtain a properly collected urine specimen via in-and-out catheterization, perform urinalysis with microscopy, and send for urine culture before making any treatment decisions. 1, 2

Why the Initial Specimen is Unreliable

  • Many squamous epithelial cells indicate peri-urethral contamination, rendering the urinalysis and culture results uninterpretable for clinical decision-making. 2, 3
  • The culture result explicitly states "contamination," meaning the specimen contains mixed normal flora or inadequate bacterial growth patterns that do not represent true bladder infection. 1, 2
  • Squamous epithelial cells ≥3 per high-power field signal specimen contamination from skin or genital surfaces, not bladder pathology. 2
  • Studies show that contamination rates for clean-catch specimens in women range from 21–32%, and the presence of squamous cells does not reliably predict contamination but does reduce the diagnostic accuracy of urinalysis markers for predicting true bacteriuria. 4, 5, 3, 6

Why Pregnancy Makes This Critical

  • Pregnant women must be screened for bacteriuria with urine culture at least once in early pregnancy, and they should be treated if results are positive (Grade A-I recommendation). 1
  • This is one of only two clinical scenarios where asymptomatic bacteriuria requires treatment, because untreated bacteriuria in pregnancy increases the risk of pyelonephritis, preterm delivery, and low-birth-weight infants. 1, 2
  • You cannot determine whether this patient has true bacteriuria requiring treatment based on a contaminated specimen. 1, 2

Proper Collection Technique

  • For women, in-and-out catheterization is the preferred method when initial specimens show high epithelial cell counts or mixed flora, as it minimizes contamination from peri-urethral flora. 2
  • Midstream clean-catch techniques in women have contamination rates of 28–32% and do not significantly reduce contamination compared to non-cleansed samples. 5, 7
  • Process the specimen within 1 hour at room temperature or refrigerate within 4 hours to prevent bacterial overgrowth that could falsely elevate colony counts. 2

Diagnostic Criteria Before Treatment

  • Both pyuria (≥10 WBC/HPF or positive leukocyte esterase) AND acute urinary symptoms (dysuria, frequency, urgency, fever >38.3°C, gross hematuria) are required to diagnose and treat a symptomatic UTI. 1, 2
  • In pregnancy, asymptomatic bacteriuria is defined as ≥10⁵ CFU/mL of a single organism on two consecutive properly collected specimens (or one catheterized specimen with ≥10² CFU/mL). 1
  • The current specimen with WBCs 20–50 and RBCs 6–20 suggests possible pyuria, but these findings cannot be interpreted in the context of a contaminated specimen with many squamous cells. 2, 3

Management Algorithm

  1. Obtain catheterized urine specimen using sterile technique. 2
  2. Perform urinalysis with microscopy looking for:
    • Pyuria (≥10 WBC/HPF or positive leukocyte esterase)
    • Bacteriuria
    • Absence of squamous epithelial cells (confirming clean specimen)
    • 1, 2
  3. Send urine culture with susceptibility testing before starting any antibiotics. 1, 2
  4. If culture shows ≥10⁵ CFU/mL of a single organism, treat with a 3–7 day course of antibiotics (nitrofurantoin, fosfomycin, or amoxicillin-clavulanate are pregnancy-safe options). 1, 2
  5. Perform periodic screening for recurrent bacteriuria following therapy (Grade A-III recommendation). 1

Critical Pitfalls to Avoid

  • Do not treat empirically based on a contaminated specimen; this leads to unnecessary antibiotic exposure without confirming true infection. 1, 2
  • Do not repeat a clean-catch specimen if the first showed many squamous cells; contamination rates remain high (28–32%) even with meticulous technique. 5, 7
  • Do not assume pyuria alone indicates infection; pyuria accompanying asymptomatic bacteriuria is common and is not an indication for treatment outside of pregnancy and pre-urologic procedures. 1
  • Do not delay proper specimen collection; untreated bacteriuria in pregnancy carries significant maternal and fetal risks. 1, 2

Special Pregnancy Considerations

  • Treatment duration should be 3–7 days for confirmed asymptomatic bacteriuria in pregnancy. 1
  • First-line options include: nitrofurantoin 100 mg twice daily for 5–7 days (avoid near term due to hemolysis risk), fosfomycin 3 g single dose, or amoxicillin-clavulanate if susceptible. 2
  • Avoid fluoroquinolones and trimethoprim-sulfamethoxazole in the first trimester due to teratogenic risks. 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Urinary Tract Infection Diagnosis and Evaluation

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Research

Outpatient urine culture: does collection technique matter?

Archives of internal medicine, 2000

Research

Urinary Squamous Epithelial Cells Do Not Accurately Predict Urine Culture Contamination, but May Predict Urinalysis Performance in Predicting Bacteriuria.

Academic emergency medicine : official journal of the Society for Academic Emergency Medicine, 2016

Related Questions

What is the significance and recommended management of a urinalysis showing too numerous to count squamous epithelial cells with all other parameters normal?
What does it indicate when a urinalysis microscopy shows significant squamous epithelial cell contamination and low-level hematuria?
What number of squamous cells on a Urinalysis (UA) is considered contamination?
What are the implications and next steps for a patient with a urinalysis positive for squamous epithelial cells?
What does the presence of elevated squamous epithelial cells in a urine sample indicate?
For a healthy adult with occasional herpes labialis, what L‑lysine dosage and regimen are recommended for treatment and prophylaxis, and what contraindications should be considered?
What is the toxic dose of intravenous cefuroxime in pediatric patients and what adverse effects should be monitored?
What criteria should a clinician and patient use to determine that therapeutic goals have been met and the client with anxiety can be discharged from active treatment?
For a 9.5 kg infant, what is the appropriate acetaminophen (Tylenol) dose in milligrams per administration?
A patient on progesterone supplementation has urinary estrone‑3‑glucuronide (E1G) ~122 µg/L on cycle day 23–24 and 68 µg/L on day 25 after the LH surge; does this estrogen pattern indicate early pregnancy and what is the likelihood that she is pregnant?
In an end‑stage renal disease patient on intermittent hemodialysis presenting with hematuria, is ciprofloxacin appropriate and what dose regimen should be used?

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.