What is the pathophysiology of Huntington's disease?

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Last updated: February 26, 2026View editorial policy

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Pathophysiology of Huntington's Disease

Genetic Mechanism

Huntington's disease is caused by an expanded CAG trinucleotide repeat (≥40 repeats) in exon 1 of the HTT gene on chromosome 4p16.3, which produces an abnormally long polyglutamine tract that triggers protein misfolding, toxic aggregation, and selective neuronal death. 1

  • The HTT gene spans approximately 170 kb, contains 67 exons, and encodes a 3,144-amino-acid huntingtin protein with a molecular weight of ~350 kDa. 2
  • Normal alleles typically contain 17–19 CAG repeats and are never associated with disease. 2, 1
  • Alleles with ≥40 repeats demonstrate full penetrance and 100% diagnostic specificity, accounting for >99% of HD cases. 2, 1
  • The mutation follows autosomal-dominant inheritance with meiotic instability, particularly during paternal transmission, where intermediate alleles (27–35 repeats) carry a 6–10% risk of expanding to pathogenic length. 2, 1

Molecular Pathogenesis: Toxic Gain-of-Function

The expanded polyglutamine tract causes the mutant huntingtin protein to misfold and adopt abnormal conformations, initiating a toxic gain-of-function mechanism that drives neurodegeneration. 2

Protein Misfolding and Aggregation

  • The abnormal polyQ stretch induces structural alterations in the huntingtin protein, leading to protein misfolding that cannot be cleared by cellular degradation systems (lysosomes and ubiquitin-proteasome system). 2
  • Proteolytic cleavage generates N-terminal fragments containing the polyglutamine expansion that are especially prone to aggregation. 1
  • These misfolded proteins and fragments accumulate as intranuclear inclusions in neurons, forming deposits that aberrantly interact with other proteins and disrupt their normal functions. 2

Cellular Dysfunction Cascade

The protein aggregates disrupt multiple critical cellular processes, ultimately resulting in neuronal damage and death. 2

  • Proteostasis disruption: Impaired protein quality control and degradation pathways. 2
  • Nuclear pore complex dysfunction: Altered nucleocytoplasmic transport. 2
  • Transcriptional dysregulation: Abnormal gene expression patterns. 2
  • Mitochondrial dysfunction: Impaired energy production and increased reactive oxygen species. 2
  • Axonal transport defects: Disrupted intracellular trafficking. 2
  • Synaptic signaling abnormalities: Impaired neurotransmission. 2
  • Altered post-translational modifications: Abnormal protein processing affecting function and degradation. 2, 1

Selective Neurodegeneration Pattern

Despite ubiquitous expression of mutant huntingtin throughout neural and non-neural tissue, neurodegeneration is highly selective for the caudate nucleus and putamen (striatum), which are the primary sites of neuronal loss. 2, 1, 3

  • The mechanism underlying this regional selectivity remains incompletely understood, as the mutant protein is expressed throughout the brain and body during the entire lifetime. 3
  • Other regions including basal ganglia, hypothalamus, cortex, and brain stem are also involved but to a lesser degree. 2

Clinical Manifestations Linked to Pathology

Striatal degeneration produces the characteristic triad of motor, cognitive, and psychiatric symptoms through disruption of basal ganglia-cortical circuits. 1, 3

Motor Symptoms

  • Choreic (involuntary) movements result from striatal degeneration disrupting motor-control circuits. 1

Cognitive Decline

  • Progressive loss of neurons in basal ganglia and their cortical connections underlies cognitive deterioration. 1

Psychiatric Manifestations

  • Involvement of limbic and cortical networks leads to behavioral changes and affective symptoms. 1

Disease Course

  • The disease produces a devastating progression over 15–20 years with no effective disease-modifying treatment currently available. 3, 4

Common Pitfalls

  • Do not confuse intermediate alleles (27–35 repeats) with disease-causing alleles: These do not cause disease in carriers but carry transmission risk, particularly with paternal inheritance. 2, 1
  • Recognize that reduced penetrance alleles (36–39 repeats) have variable clinical expression: Not all carriers will develop symptoms, though the alleles are meiotically unstable. 2, 1
  • Understand that HD is not an immune-mediated disease: Immunosuppressive therapies have no role in management, as the pathology results from direct neurotoxicity of the mutant protein. 1

References

Guideline

Genetic Basis and Pathophysiology of Huntington’s Disease

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Huntington's Disease Pathogenesis and Clinical Impact

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Current Treatments and Clinical Trials for Huntington's Disease

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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