What is the primary etiology of Small Intestine Bacterial Overgrowth (SIBO)?

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Last updated: April 28, 2025View editorial policy

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From the Guidelines

The root cause of Small Intestinal Bacterial Overgrowth (SIBO) is a disruption in the normal protective mechanisms that control bacterial populations in the small intestine, primarily due to impaired intestinal motility, which allows bacteria to accumulate rather than being swept through the digestive tract, as supported by the most recent study in 2023 1. This disruption can occur due to various underlying conditions, including:

  • Impaired intestinal motility, which can be caused by conditions such as diabetes, scleroderma, hypothyroidism, and prior abdominal surgeries that may create adhesions or alter anatomy
  • Structural abnormalities like intestinal diverticula, fistulas, or strictures, which can create areas where bacteria collect and multiply
  • Conditions that reduce stomach acid, such as long-term proton pump inhibitor use, or affect immune function, which can compromise the body's natural defenses against bacterial overgrowth
  • Dysfunction of the migrating motor complex (MMC), the cleansing wave of contractions that occurs between meals, which normally helps clear bacteria from the small intestine Some key points to consider in the management of SIBO include:
  • Identifying and treating the underlying causes of SIBO, rather than just temporarily reducing bacterial levels with antibiotics
  • Using antibiotics, such as rifaximin, metronidazole, or ciprofloxacin, to reduce bacterial overgrowth, as suggested in the 2020 study 1
  • Considering the use of probiotics, although there is currently limited data on their effectiveness in SIBO management
  • Addressing bile salt malabsorption, which may occur in some cases of SIBO, using bile salt sequestrants such as cholestyramine or colesevelam, as mentioned in the 2020 study 1 It is essential to note that SIBO can have significant consequences on morbidity, mortality, and quality of life, including malabsorption, abdominal discomfort, diarrhea, constipation, flatulence, and bloating, as highlighted in the 2017 study 1. Therefore, effective management of SIBO requires a comprehensive approach that addresses the underlying causes and promotes optimal intestinal health.

From the Research

Understanding SIBO

The root cause of Small Intestine Bacterial Overgrowth (SIBO) is not explicitly stated in the provided studies. However, we can look at related information on Irritable Bowel Syndrome (IBS) which may share some similarities with SIBO:

  • Alterations in the diversity of the gut microbiome are thought to play a role in the pathogenesis of IBS, as mentioned in the study 2.
  • The gut microbiome and its modification through therapeutic means such as probiotics, prebiotics, and low FODMAP diet are associated with the alleviation of IBS symptoms, according to 2.

Gut Microbiome and Diet

The provided studies discuss the role of diet in managing IBS symptoms, which might be relevant to understanding SIBO:

  • A low FODMAP diet can improve IBS symptoms, as found in 7 systematic reviews and meta-analyses cited in 2.
  • However, the use of a low FODMAP diet is recommended only as a second-line treatment, guided by qualified clinicians, due to potential negative health impacts from its inappropriate use, as noted in 2 and further discussed in 3.

Limitations and Future Directions

While the studies do not directly address the root cause of SIBO, they highlight the need for further research into the management of gastrointestinal disorders:

  • There is a lack of long-term, large, randomized controlled studies on the low FODMAP diet, as mentioned in 3.
  • Future studies should focus on new methods of teaching and learning the low FODMAP diet, predictors of response, and its potential use in diseases other than functional disorders, according to 3.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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