Antibiotic Treatment for Infected Pilonidal Cysts
For infected pilonidal cysts, first-line antibiotic therapy should include coverage against Staphylococcus aureus and anaerobes with a combination of amoxicillin-clavulanate or, if MRSA is suspected, trimethoprim-sulfamethoxazole plus metronidazole.
Pathophysiology and Microbiology
Pilonidal cysts are acquired lesions in the sacrococcygeal region that become infected when bacteria colonize the area. When infected, these cysts typically contain:
- Staphylococcus aureus (including potential MRSA)
- Mixed anaerobic bacteria
- Gram-negative enteric organisms (due to proximity to the anus)
Antibiotic Selection Algorithm
First-Line Options:
Amoxicillin-clavulanate (875/125 mg twice daily orally) 1
- Provides excellent coverage against both Staphylococcus and anaerobes
- Duration: 5-7 days
If MRSA is suspected or prevalent in your area:
- Trimethoprim-sulfamethoxazole (1-2 double-strength tablets twice daily) plus metronidazole (500 mg three times daily) 1
- Duration: 5-7 days
Alternative Options:
Cephalexin (500 mg four times daily) plus metronidazole (500 mg three times daily) 1, 2
- Good option for penicillin-allergic patients without anaphylaxis
- Duration: 7 days
Clindamycin (300-450 mg three times daily) 1
- Covers both Staphylococcus and anaerobes
- Good option for penicillin-allergic patients
- Duration: 7 days
Important Considerations
Surgical Management
- Antibiotics alone are insufficient treatment for infected pilonidal cysts
- Incision and drainage is the recommended primary treatment for inflamed pilonidal cysts 1
- Antibiotics should be considered as adjunctive therapy to surgical drainage when:
- Systemic signs of infection are present (fever, tachycardia, etc.)
- Surrounding cellulitis extends beyond the immediate area
- Patient has impaired host defenses 1
Clinical Pearls
- Recurrent pilonidal abscesses should be drained and cultured early in the course of infection 1
- For recurrent infections, consider a 5-day decolonization regimen with intranasal mupirocin, daily chlorhexidine washes, and decontamination of personal items 1
- Aspiration of pilonidal abscesses followed by antibiotics has shown effectiveness in 83% of cases in selected patients 2
Common Pitfalls to Avoid
- Treating with antibiotics alone without surgical drainage
- Failing to cover anaerobic bacteria when selecting antibiotics
- Not considering MRSA in patients with risk factors or prior MRSA infections
- Prolonged antibiotic courses when shorter durations (5-7 days) are typically sufficient
Special Situations
Severe Infection or Immunocompromised Patients
For patients with systemic signs of infection (SIRS) or immunocompromised status:
- Vancomycin (15-20 mg/kg IV every 12 hours) plus piperacillin-tazobactam (3.375 g IV every 6-8 hours) 1
- Consider hospitalization for IV antibiotics and close monitoring
Recurrent Infections
- Culture-directed antibiotic therapy for 5-10 days 1
- Consider definitive surgical treatment options to prevent recurrence 3
Remember that while antibiotics are important in managing infected pilonidal cysts, they should be used as an adjunct to appropriate surgical management, which remains the cornerstone of treatment.