What is the treatment for fungal urinary tract infections (UTIs)?

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Last updated: August 29, 2025View editorial policy

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Treatment of Fungal Urinary Tract Infections

For symptomatic fungal urinary tract infections, oral fluconazole 200 mg (3 mg/kg) daily for 2 weeks is the first-line treatment for fluconazole-susceptible organisms. 1, 2

Diagnostic Considerations

  • Differentiate between contamination, colonization, and true infection
  • True infection typically presents with symptoms of UTI (dysuria, frequency, urgency)
  • Asymptomatic candiduria generally does not require treatment except in:
    • Neutropenic patients
    • Patients undergoing urological procedures
    • Low birth weight infants

Treatment Algorithm Based on Candida Species

Fluconazole-Susceptible Candida (including C. albicans)

  • First-line: Oral fluconazole 200 mg (3 mg/kg) daily for 2 weeks 1, 2
  • For pyelonephritis: Increase dose to 200-400 mg (3-6 mg/kg) daily for 2 weeks 1
  • Treatment should continue until symptoms resolve and urine cultures become negative 2

Fluconazole-Resistant C. glabrata

  • First-line: Amphotericin B deoxycholate 0.3-0.6 mg/kg daily for 1-7 days 1
  • Alternative options:
    • Amphotericin B deoxycholate with oral flucytosine (25 mg/kg 4 times daily) 1
    • Monotherapy with oral flucytosine (25 mg/kg 4 times daily for 2 weeks) 1
    • Amphotericin B bladder irrigation (50 mg/L sterile water daily for 5 days) for refractory cystitis 1

C. krusei Infections

  • First-line: Amphotericin B deoxycholate 0.3-0.6 mg/kg daily for 1-7 days 1

Critical Adjunctive Measures

  • Remove indwelling bladder catheters if feasible (strong recommendation) 1, 2
  • Eliminate urinary tract obstruction if present 1
  • Consider removal or replacement of nephrostomy tubes or stents 1
  • Discontinue unnecessary antibiotics 2

Special Considerations

Fungus Balls

  • Require aggressive surgical debridement in addition to antifungal therapy 1
  • Consider local irrigation with amphotericin B (50 mg/L sterile water) if direct access to collecting system is available 1
  • Other methods include intermittent saline irrigation, debulking through percutaneous device, and irrigation with streptokinase 1

Prostatitis and Epididymo-orchitis

  • Fluconazole is the agent of choice 1
  • May require surgical drainage of abscesses or other surgical debridement 1

Important Pharmacological Considerations

  • Fluconazole achieves high concentrations in urine, making it ideal for UTIs 1, 2
  • Echinocandins and newer azoles (voriconazole, posaconazole) should NOT be used for uncomplicated fungal UTIs due to poor urinary concentrations 2
  • Liposomal amphotericin B should NOT be used for lower UTIs due to inadequate urine concentrations 2
  • Flucytosine should not be used as monotherapy due to risk of resistance development 2

Common Pitfalls to Avoid

  • Treating asymptomatic candiduria unnecessarily 2
  • Failing to remove indwelling catheters or address underlying conditions 2
  • Using antifungals with poor urinary concentrations 2
  • Not distinguishing between colonization and true infection 2
  • Inadequate duration of therapy for symptomatic infections 2

Follow-up

  • Obtain follow-up urine cultures to assess treatment effectiveness 2
  • Monitor for symptom resolution 2
  • Screen for potential complications or dissemination 2

By following this treatment algorithm and addressing underlying risk factors, most fungal UTIs can be effectively managed with appropriate antifungal therapy.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Management of Fungal Infections in Urinary Tract

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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