What are the first and second line antibiotics for common bacterial and viral infections?

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Last updated: September 10, 2025View editorial policy

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First-Line and Second-Line Antibiotics for Common Bacterial and Viral Infections

The most appropriate first-line antibiotics for common bacterial infections are typically narrow-spectrum Access category drugs, while viral infections generally do not require antibiotic treatment as antibiotics are ineffective against viruses. 1

Bacterial Infections

Respiratory Tract Infections

Pharyngitis (Sore Throat)

  • First choice:
    • Watchful waiting with symptom relief (no antibiotics) for suspected viral cases
    • Amoxicillin or phenoxymethylpenicillin for suspected bacterial (Group A Streptococcal) cases 1
  • Second choice:
    • Cefalexin or clarithromycin (for penicillin allergy) 1

Acute Otitis Media

  • First choice:
    • Watchful waiting for most cases (especially in children >2 years)
    • Amoxicillin if antibiotics indicated 1
  • Second choice:
    • Amoxicillin-clavulanic acid 1

Community-Acquired Pneumonia

  • First choice:
    • Amoxicillin or amoxicillin-clavulanic acid 1
  • Second choice:
    • Macrolides (azithromycin, clarithromycin) or doxycycline 1
    • Respiratory fluoroquinolones for severe cases 1

Gastrointestinal Infections

Bacterial Diarrhea/Traveler's Diarrhea

  • First choice:
    • Ciprofloxacin or azithromycin 1
  • Second choice:
    • Trimethoprim-sulfamethoxazole (where resistance is low) 1

Enteric (Typhoid) Fever

  • First choice:
    • Fluoroquinolones (ciprofloxacin, ofloxacin) for susceptible strains 1
  • Second choice:
    • Azithromycin or third-generation cephalosporins (ceftriaxone) 1

Urinary Tract Infections

Uncomplicated Lower UTI

  • First choice:
    • Nitrofurantoin, fosfomycin, or pivmecillinam 2
  • Second choice:
    • Trimethoprim-sulfamethoxazole (if local resistance <20%)
    • Oral cephalosporins (cephalexin, cefixime) 2

Complicated UTI/Pyelonephritis

  • First choice:
    • Fluoroquinolones (ciprofloxacin) 3
  • Second choice:
    • Third-generation cephalosporins (ceftriaxone) 4
    • Amoxicillin-clavulanic acid 1

Skin and Soft Tissue Infections

Cellulitis/Impetigo/Erysipelas

  • First choice:
    • Dicloxacillin or other penicillinase-resistant penicillins 5
  • Second choice:
    • First-generation cephalosporins (cefalexin) 1
    • Clindamycin (for penicillin allergy) 6

Bone and Joint Infections (Osteomyelitis)

  • First choice:
    • Clindamycin for non-MRSA infections 6
  • Second choice:
    • Trimethoprim-sulfamethoxazole for MRSA 6
    • Linezolid for resistant cases 6

Viral Infections

Important: Antibiotics are ineffective against viral infections and should not be used unless there is evidence of bacterial co-infection or superinfection. 7, 8

Common Viral Infections That Do NOT Require Antibiotics:

  • Common cold
  • Viral pharyngitis
  • Influenza
  • Viral bronchitis
  • Most cases of acute sinusitis
  • Viral gastroenteritis

Special Considerations for Viral Infections:

Viral Respiratory Infections

  • First approach: Symptomatic treatment only
  • When to consider antibiotics: Only if clear evidence of bacterial superinfection (persistent fever >3-5 days, purulent sputum, focal chest findings) 7

Viral Meningitis/Encephalitis

  • Initial approach: If bacterial meningitis cannot be ruled out, empiric antibiotics should be started while awaiting culture results 7
  • First choice for empiric therapy: Ceftriaxone plus vancomycin 4

Common Pitfalls to Avoid

  1. Treating viral infections with antibiotics - This contributes to antibiotic resistance and provides no benefit to patients 1

  2. Using broad-spectrum antibiotics when narrow-spectrum would suffice - Always prefer Access category antibiotics when appropriate 1

  3. Not considering local resistance patterns - Local antibiograms should guide empiric therapy, especially for UTIs and respiratory infections 2

  4. Inappropriate duration of therapy - Most uncomplicated infections require only 5-7 days of treatment; longer courses increase resistance risk 6

  5. Not adjusting therapy based on culture results - Always narrow therapy when culture results become available 1

  6. Using fluoroquinolones as first-line therapy - These should be reserved for specific indications due to resistance concerns and adverse effects 1, 3

  7. Failing to recognize when surgical intervention is needed - Particularly important in osteomyelitis and complicated skin infections 6

Remember that antibiotic selection should follow the AWaRe (Access, Watch, Reserve) framework, with preference given to Access antibiotics whenever possible to reduce antimicrobial resistance 1.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Osteomyelitis Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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