What causes vitamin B12 and vitamin B6 deficiencies?

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Causes of Vitamin B12 and Vitamin B6 Deficiency

The most common causes of vitamin B12 deficiency are food-bound malabsorption due to atrophic gastritis (affecting up to 20% of older adults), widespread use of proton pump inhibitor drugs, and low dietary intake of animal-source foods, while vitamin B6 deficiency is primarily caused by inadequate dietary intake. 1

Vitamin B12 Deficiency Causes

Malabsorption-Related Causes

  • Gastric Issues:

    • Atrophic gastritis (affects up to 20% of older adults) 1
    • Proton pump inhibitor medication use 1, 2
    • Helicobacter pylori infection 3
    • Gastrectomies 4
    • Food-bound cobalamin malabsorption in the elderly 3
  • Intestinal Issues:

    • Ileal disease or resection (>20 cm of distal ileum) 2
    • Inflammatory bowel disease, particularly with ileal involvement 2, 4
    • Bacterial overgrowth 4
    • Pancreatic insufficiency 4
    • Parasitic infestations 4
    • Celiac disease 4
    • Tropical sprue 4
    • Short bowel syndrome 4
    • Chronic radiation enteritis of the distal ileum 4
  • Autoimmune Conditions:

    • Pernicious anemia (autoimmune destruction of intrinsic factor) 5, 4
    • Addison's pernicious anemia 4

Medication-Related Causes

  • Metformin (long-term use) 2
  • Most antibiotics (can interfere with B12 absorption) 5
  • Colchicine 5
  • Para-aminosalicylic acid 5

Dietary Causes

  • Strict vegetarian/vegan diet (B12 is not present in plant foods) 5, 3
  • Low intake of animal-source foods (meat, dairy, eggs) 3

Genetic Factors

  • Gene polymorphisms in transcobalamins 3
  • Inherited disorders (Intrinsic factor deficiency, Imerslund-Gräsbeck disease) 4

Other Causes

  • Heavy alcohol consumption for longer than 2 weeks 5, 3
  • Obesity 4
  • Bariatric surgery 2, 4
  • Increased requirements during pregnancy and lactation 5

Vitamin B6 Deficiency Causes

Primary Causes

  • Low dietary intake 1
  • Aging (altered requirements) 1

Dietary Factors

  • Inadequate consumption of lean meat (good source of B6) 1
  • Insufficient intake of milk and dairy foods 1
  • Limited consumption of fortified breakfast cereals 1

Associated Conditions

  • Inflammatory bowel disease 1
  • Malabsorption syndromes 1
  • Celiac disease 1

Clinical Implications and Monitoring

High-Risk Populations

  • Older adults (>75 years) 2
  • Patients with ileal disease or resection 2
  • Vegetarians and vegans 2, 3
  • Patients on long-term metformin therapy 2
  • Patients with inflammatory bowel disease 1
  • Pregnant and lactating women 5

Consequences of Deficiency

  • If B12 deficiency progresses for longer than 3 months, it may produce permanent degenerative lesions of the spinal cord 5
  • B12 deficiency is associated with megaloblastic anemia, neurological symptoms, and cognitive impairment 6
  • B6 deficiency is associated with increased risk of depression and anxiety 1
  • Both deficiencies can contribute to elevated homocysteine levels, increasing cardiovascular risk 2

Prevention Strategies

  • Regular consumption of animal-source foods (meat, dairy, eggs) for B12 3
  • Include lean meat, milk, dairy foods for vitamin B6 1
  • Consider fortified breakfast cereals as sources of both vitamins 1
  • For high-risk individuals, supplementation may be necessary 2
  • Regular monitoring of B12 levels in patients with risk factors 2

Understanding these causes is essential for proper diagnosis and management of vitamin B12 and B6 deficiencies, particularly in high-risk populations where early intervention can prevent irreversible neurological damage.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Vitamin B12 Deficiency Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Causes of vitamin B12 and folate deficiency.

Food and nutrition bulletin, 2008

Research

Vitamin B12 absorption and malabsorption.

Vitamins and hormones, 2022

Research

Vitamin B12 deficiency.

Vitamins and hormones, 2022

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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