What is the initial workup for secondary amenorrhea?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: September 18, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Initial Workup of Secondary Amenorrhea

The initial workup for secondary amenorrhea should include a thorough menstrual history, physical examination, pregnancy test, and laboratory assessment of luteinizing hormone (LH), follicle-stimulating hormone (FSH), prolactin, thyroid-stimulating hormone (TSH), and estradiol levels. 1, 2

Definition and Timing for Evaluation

Secondary amenorrhea is defined as:

  • Cessation of regular menses for 3 months
  • Cessation of irregular menses for 6 months 3, 4

Step-by-Step Diagnostic Approach

1. History and Physical Examination

Key History Elements:

  • Age of menarche
  • Previous menstrual regularity
  • Medications (including hormonal contraceptives)
  • Weight changes
  • Exercise patterns
  • Dietary habits and caloric intake
  • Stress levels
  • Presence of other health issues
  • Family menstrual history 2

Physical Examination:

  • Height, weight, BMI calculation
  • Vital signs
  • Assessment of anthropometry
  • Pubertal staging
  • Signs of eating disorders
  • Signs of hyperandrogenism (hirsutism, acne)
  • Signs of hypoestrogen-related vaginal atrophy
  • Thyroid examination
  • Galactorrhea assessment 2, 1

2. Initial Laboratory Testing

First-line laboratory tests:

  • Pregnancy test (to exclude pregnancy)
  • Luteinizing hormone (LH)
  • Follicle-stimulating hormone (FSH)
  • Prolactin
  • Thyroid-stimulating hormone (TSH)
  • Estradiol 2, 1, 4

3. Additional Testing Based on Initial Results

If elevated FSH/LH:

  • Consider primary ovarian insufficiency
  • Karyotype analysis may be indicated

If elevated prolactin:

  • Consider pituitary MRI to rule out prolactinoma 1

If normal/low FSH/LH with normal prolactin and TSH:

  • Consider functional hypothalamic amenorrhea (FHA)
  • Evaluate for energy deficiency, excessive exercise, stress 2, 1

If normal/elevated LH with normal/low FSH:

  • Consider polycystic ovary syndrome (PCOS)
  • Androgen profile (total testosterone, free testosterone, DHEA-S)
  • Pelvic ultrasound to assess ovarian morphology 2

If normal/low FSH/LH with signs of hyperandrogenism:

  • Complete androgen profile
  • Consider adrenal causes 1

4. Specialized Testing When Indicated

  • Pelvic ultrasound: To assess endometrial thickness, ovarian morphology, and rule out anatomical abnormalities 2
  • Progestin challenge test: May help differentiate between hypoestrogenic states (no withdrawal bleed) and eustrogenic states (withdrawal bleed) 2, 1
  • Bone mineral density (DXA): Indicated if amenorrhea persists for ≥6 months, especially in patients with FHA 2, 1

Common Diagnostic Scenarios

Functional Hypothalamic Amenorrhea (FHA)

  • Low/normal LH, FSH
  • Low estradiol
  • Normal prolactin and TSH
  • Often associated with energy deficiency, stress, or excessive exercise
  • Diagnosis of exclusion 2, 1

Polycystic Ovary Syndrome (PCOS)

  • Normal/elevated LH
  • Normal/low FSH
  • LH:FSH ratio often >2
  • Signs of hyperandrogenism
  • Polycystic ovarian morphology on ultrasound 2, 1

Hyperprolactinemia

  • Elevated prolactin
  • Normal/low LH, FSH
  • May present with galactorrhea 1, 5

Primary Ovarian Insufficiency

  • Elevated FSH, LH
  • Low estradiol
  • May occur at any age 1, 4

Common Pitfalls to Avoid

  • Misdiagnosing FHA with polycystic ovarian morphology (FHA-PCOM) as PCOS: These conditions require different treatment approaches. FHA-PCOM patients typically have lower LH:FSH ratios (<1) compared to PCOS patients (>2) 2, 1

  • Overlooking subtle energy deficits: Energy deficiency can lead to hypothalamic amenorrhea even without intense exercise or obvious weight loss 1

  • Neglecting bone health evaluation: Women with amenorrhea >6 months should have bone density assessment due to risk of osteoporosis 2, 1

  • Focusing only on weight rather than energy balance: Energy availability is more important than weight alone in restoring menstrual function 1

By following this systematic approach to the initial workup of secondary amenorrhea, clinicians can efficiently identify the underlying cause and develop appropriate treatment strategies to address both the amenorrhea and any associated health risks.

References

Guideline

Hypothalamic Amenorrhea Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Amenorrhea: an approach to diagnosis and management.

American family physician, 2013

Research

Association of Thyroid Profile and Prolactin Level in Patient with Secondary Amenorrhea.

The Malaysian journal of medical sciences : MJMS, 2016

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.