What are the management options for microscopic colitis?

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Last updated: September 26, 2025View editorial policy

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Microscopic Colitis Management

Budesonide at 9 mg daily for 8 weeks is the first-line treatment for symptomatic microscopic colitis, with patients being 2.52 times more likely to achieve clinical remission compared to no treatment. 1

Diagnostic Workup

  • Obtain biopsies from multiple segments of the colon during colonoscopy (normal-appearing mucosa)
  • Screen for associated conditions:
    • Celiac disease (present in 5-7% of microscopic colitis patients)
    • Bile acid diarrhea (present in 41% of collagenous colitis and 29% of lymphocytic colitis)
  • Review medications that may cause or exacerbate microscopic colitis:
    • NSAIDs
    • Proton pump inhibitors
    • SSRIs
    • Statins
  • Assess modifiable risk factors:
    • Cigarette smoking
    • Alcohol consumption

Treatment Algorithm

First-Line Treatment

  • Budesonide 9 mg daily for 8 weeks
    • High-quality evidence supports its effectiveness
    • Superior efficacy with patients 2.52 times more likely to achieve remission
    • Improves both clinical symptoms and histological inflammation
    • Favorable risk/benefit profile with convenient once-daily dosing 1

Second-Line Options (if budesonide not feasible)

  1. Mesalamine

    • Conditional recommendation based on moderate quality evidence
    • Less effective than budesonide 1
  2. Bismuth salicylate

    • Conditional recommendation based on low quality evidence
    • Significant pill burden (8-9 tablets divided 3 times daily)
    • Consider for patients with contraindications to corticosteroids or cost concerns 2
  3. Prednisolone/Prednisone

    • Conditional recommendation based on very low quality evidence
    • Consider for patients with refractory symptoms after other treatments
    • Risk of adverse events is significant with systemic corticosteroids 2
  4. Symptomatic treatment with loperamide

    • Can be used as adjunct therapy for immediate symptomatic relief 3

For Refractory Disease

  • Consider:
    • Cholestyramine (especially if bile acid diarrhea is present)
    • Immunomodulators (azathioprine, methotrexate)
    • Anti-TNF-α inhibitors 3

Maintenance Therapy

  • Consider low-dose budesonide for maintenance in patients with recurrent symptoms
  • Monitor bone health in patients on long-term budesonide therapy
  • Consider discontinuation of budesonide after 6-12 months 1

Important Considerations

Medication Management

  • Discontinue medications associated with microscopic colitis when possible:
    • NSAIDs, PPIs, SSRIs, statins 1, 3

Not Recommended

  • Combination therapy with cholestyramine and mesalamine (no incremental benefit over mesalamine alone) 2
  • Boswellia serrata (insufficient evidence of benefit) 2
  • Probiotics (insufficient evidence of benefit) 2

Monitoring

  • Assess response to treatment based on reduction in diarrhea frequency and improved stool consistency
  • For patients on long-term budesonide: monitor for bone loss and other corticosteroid-related side effects 1

Common Pitfalls to Avoid

  • Failing to obtain biopsies from multiple colon segments during diagnosis
  • Overlooking associated conditions like celiac disease or bile acid diarrhea
  • Neglecting bone health monitoring in patients on long-term budesonide
  • Continuing medications that may trigger or worsen microscopic colitis
  • Inadequate follow-up of patients with recurrent or refractory disease 1

References

Guideline

Microscopic Colitis Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Management of microscopic colitis: challenges and solutions.

Clinical and experimental gastroenterology, 2019

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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