What lab tests should be ordered for a patient with diarrhea lasting 2 weeks?

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Laboratory Tests for Diarrhea Lasting 2 Weeks

For a patient with diarrhea lasting 2 weeks, stool testing should be performed for Salmonella, Shigella, Campylobacter, Yersinia, Clostridium difficile, and Shiga toxin-producing E. coli (STEC), as well as examination for parasites. 1

Initial Laboratory Evaluation

  • Complete blood count (CBC), C-reactive protein (CRP), basic metabolic panel (BMP) to assess for inflammation, dehydration, and electrolyte abnormalities 1, 2
  • Anti-tissue transglutaminase IgA and total IgA to screen for celiac disease 2
  • Thyroid function tests to rule out hyperthyroidism as a cause of chronic diarrhea 1
  • Stool culture for bacterial pathogens (Salmonella, Shigella, Campylobacter, Yersinia) 1
  • Testing for C. difficile toxin, especially if there is history of antibiotic use within the preceding 8-12 weeks 1
  • Stool examination for ova and parasites, particularly for Giardia, Cryptosporidium, Cyclospora, and Entamoeba histolytica 1

Stool Characteristics and Specific Testing

For Watery Diarrhea

  • Stool osmotic gap to differentiate secretory from osmotic diarrhea 2, 3
  • Stool electrolytes (Na+, K+) 1
  • Consider 75Se-HCAT scan or serum 7α hydroxy-4-cholesten-3-one if bile acid malabsorption is suspected 1

For Bloody or Inflammatory Diarrhea

  • Stool for occult blood 1
  • Fecal lactoferrin or calprotectin to detect inflammatory processes 1
  • Culture for STEC with specific testing for Shiga toxin 1
  • Monitor hemoglobin and platelet counts if STEC is suspected to detect early signs of hemolytic uremic syndrome 1

For Fatty Diarrhea

  • Fecal elastase to assess for pancreatic insufficiency 1
  • Qualitative fecal fat if malabsorption is suspected 1, 4

Special Considerations

  • For travelers with diarrhea lasting 14 days or longer, specific testing for intestinal parasites is recommended 1
  • In immunocompromised patients, additional testing should include Cryptosporidium, Cyclospora, Cystoisospora, microsporidia, Mycobacterium avium complex, and cytomegalovirus 1
  • If C. difficile infection is suspected, check for leukocytosis which can be a harbinger and surrogate marker (mean WBC 15,800/mm³ in positive cases vs. 7,700/mm³ in negative cases) 5

When to Consider Endoscopic Evaluation

  • Persistent diarrhea with negative initial laboratory workup 1
  • Age >45 years (colonoscopy recommended due to increased risk of neoplasia) 1
  • Presence of alarm features such as weight loss, nocturnal symptoms, or blood in stool 3
  • For patients <45 years without alarm features, flexible sigmoidoscopy with biopsy may be sufficient 1

Follow-up Testing

  • If initial testing is negative but symptoms persist, consider:
    • Testing for microscopic colitis (requires colonoscopy with biopsy) 2
    • Small bowel bacterial overgrowth (glucose hydrogen breath test) 1
    • Inflammatory bowel disease markers if not already checked 1
    • Non-infectious causes including irritable bowel syndrome and post-infectious IBS 1, 3

Common Pitfalls to Avoid

  • Don't assume all chronic diarrhea is infectious; after 2 weeks, non-infectious causes become more likely 4, 3
  • Don't forget to test for C. difficile even if the patient has not been hospitalized but has received antibiotics 1, 5
  • Multiple-pathogen nucleic acid amplification tests detect DNA, not necessarily viable organisms, so clinical correlation is essential 1
  • Remember that some patients may have more than one type of diarrhea simultaneously (e.g., both inflammatory and malabsorptive components) 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Chronic Diarrhea: Diagnosis and Management.

Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association, 2017

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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