Can a patient have a sexually transmitted infection (STI) and scrotal pain with negative Urine Microscopy and Culture (mcs) and negative C-Reactive Protein (CRP) tests?

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STI Can Cause Scrotal Pain with Negative Urine MCS and CRP Tests

Yes, a patient can have a sexually transmitted infection (STI) causing scrotal pain despite negative urine microscopy and culture (MCS) and negative C-reactive protein (CRP) tests. 1

Diagnostic Considerations for Scrotal Pain with Negative Tests

STIs as a Cause of Scrotal Pain

  • Epididymitis in sexually active men under 35 years is most commonly caused by Chlamydia trachomatis or Neisseria gonorrhoeae, which may present with scrotal pain 1
  • These infections can be present even when standard urine tests are negative 1
  • Sexually transmitted epididymitis is often accompanied by urethritis, which can be asymptomatic 1

Why Tests May Be Negative

  • Urine MCS tests primarily detect bacterial urinary tract infections but may miss STIs 2
  • CRP may not be significantly elevated in early or localized infections 3
  • A study found no significant association between STIs and positive urine cultures, suggesting they can exist independently 2
  • Standard urine cultures do not detect common STI pathogens like Chlamydia and Gonorrhea 1, 4

Recommended Diagnostic Approach

For Suspected STI with Scrotal Pain

  • Perform a Gram-stained smear of urethral exudate or intraurethral swab to detect urethritis (>5 polymorphonuclear leukocytes per oil immersion field) 1
  • Obtain nucleic acid amplification tests (NAAT) specifically for N. gonorrhoeae and C. trachomatis, either on intraurethral swab or first-void urine 1, 4
  • Consider testing for other pathogens such as Mycoplasma genitalium, Ureaplasma urealyticum, and Trichomonas vaginalis 4
  • Examine first-void uncentrifuged urine for leukocytes if urethral Gram stain is negative 1

Rule Out Other Causes

  • Consider testicular torsion, especially if pain onset is sudden and severe 1, 5
  • Ultrasound with Doppler is recommended to evaluate blood flow and rule out torsion 1
  • Consider non-infectious causes if all STI tests are negative 6

Treatment Recommendations

Empiric Treatment for Suspected STI Epididymitis

  • For patients under 35 years with scrotal pain and suspected STI, even with negative urine MCS and CRP, empiric treatment is recommended with ceftriaxone 250 mg IM in a single dose PLUS doxycycline 100 mg orally twice a day for 10 days. 1
  • For patients over 35 years or those with suspected enteric organisms: ofloxacin 300 mg orally twice daily for 10 days or levofloxacin 500 mg orally once daily for 10 days 1
  • Adjunctive measures include bed rest, scrotal elevation, and analgesics until inflammation subsides 1

Follow-Up

  • Reevaluate if no improvement within 3 days of starting treatment 1
  • Persistent swelling or tenderness after completing antibiotics requires comprehensive evaluation 1
  • Partner notification and treatment is essential if STI is confirmed or suspected 1

Important Clinical Pearls

  • Negative urine MCS and CRP do not rule out STI as a cause of scrotal pain 3, 2
  • Chronic scrotal pain syndrome is often treated with antibiotics despite limited evidence supporting bacterial etiology 6
  • In one study, only 22% of patients with chronic scrotal pain had clinically relevant bacteria detected 6
  • The differential diagnosis for persistent scrotal pain includes tumor, abscess, infarction, testicular cancer, TB, and fungal epididymitis 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Association Between Sexually Transmitted Infections and the Urine Culture.

The western journal of emergency medicine, 2024

Guideline

Testicular Torsion Diagnosis and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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