What is the accuracy of non-invasive prenatal testing (NIPT) for fetal sex determination at 9 weeks gestation?

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Accuracy of Non-Invasive Prenatal Testing (NIPT) for Fetal Sex Determination at 9 Weeks

Non-invasive prenatal testing (NIPT) using cell-free DNA (cfDNA) at 9 weeks gestation demonstrates high accuracy for fetal sex determination, with sensitivity of approximately 96.6% and specificity of 98.9%. 1

NIPT Performance for Fetal Sex Determination

  • NIPT for fetal sex determination can be performed after 9-10 weeks gestation, as approximately 10-15% of the total cell-free DNA in maternal plasma is of placental origin by this time 2
  • The accuracy of NIPT for fetal sex determination does not significantly vary by trimester or week of testing after 9 weeks, maintaining reliably high performance throughout pregnancy 1
  • Meta-analysis of studies incorporating 9,965 pregnancies showed overall mean sensitivity of 96.6% (95% CI: 95.2-97.7%) and mean specificity of 98.9% (95% CI: 98.1-99.4%) for fetal sex determination using cfDNA 1

Factors Affecting NIPT Accuracy at 9 Weeks

  • Approximately 1% of initial samples submitted for NIPT result in "no-call" results, with insufficient fetal fraction being the most common cause 2
  • Maternal factors that can reduce accuracy at 9 weeks include:
    • High maternal BMI, which is strongly associated with low fetal fraction and may result in test failure in up to 20% of women with high BMI 3
    • Use of certain anticoagulants that can interfere with cfDNA analysis 3
    • Maternal autoimmune conditions that have been linked to higher rates of no-call results 3
  • Fetal factors that may affect accuracy include:
    • Presence of certain chromosomal abnormalities, particularly trisomies 13 and 18, which can be associated with low fetal fraction 3
    • Multiple gestations or vanishing twin syndrome, which can affect fetal fraction measurements and interpretation 2, 3

Comparison with Ultrasound for Fetal Sex Determination

  • Ultrasound determination of fetal sex at 9 weeks (equivalent to 11 weeks gestational age) has significantly lower accuracy than NIPT:
    • Ultrasound accuracy at 11 weeks is only 46-70.3% 4, 5
    • Ultrasound accuracy increases with gestational age: 98.7% at 12 weeks and 100% at 13 weeks 4
    • Male fetuses are frequently misidentified as female (56% error rate) at 11 weeks by ultrasound 4

Clinical Implications

  • NIPT provides a reliable non-invasive alternative to invasive testing for sex determination in pregnancies at risk of sex-linked genetic disorders 2
  • For pregnancies requiring sex determination at 9 weeks, NIPT is significantly more accurate than ultrasound at this early gestational age 4, 1
  • If a "no-call" result occurs with NIPT at 9 weeks, repeat testing at a slightly later gestational age provides a result in approximately 75-80% of cases 2
  • The American College of Obstetricians and Gynecologists recommends offering diagnostic testing to individuals with persistent no-call results 2

Important Considerations

  • NIPT for fetal sex determination should be performed in the context of appropriate pre-test and post-test genetic counseling 2
  • Patients should be informed that while highly accurate, NIPT is a screening test, not a diagnostic test, and any abnormal or uncertain results should be confirmed with diagnostic testing 2
  • The American College of Medical Genetics and Genomics (ACMG) strongly recommends NIPT over traditional screening methods for both singleton and twin pregnancies 2
  • Alternative screening methods should be considered for women with factors predisposing to low fetal fraction, such as high BMI 3

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Factors Associated with Low Fetal Fraction in Non-Invasive Prenatal Testing

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

First-trimester determination of fetal gender by ultrasound.

Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology, 1999

Research

The sonographic identification of fetal gender from 11 to 14 weeks of gestation.

Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology, 1999

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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