What are the causes of amenorrhea (absence of menstruation)?

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Causes of Amenorrhea

Amenorrhea is primarily caused by disruptions in the hypothalamic-pituitary-ovarian axis, with the most common etiologies being polycystic ovary syndrome, hypothalamic amenorrhea, hyperprolactinemia, and primary ovarian insufficiency. 1

Primary vs. Secondary Amenorrhea

Primary Amenorrhea

Primary amenorrhea is defined as:

  • No menarche by age 15 years, or by age 13 years in the absence of secondary sexual characteristics 2
  • Common causes include:
    • Chromosomal irregularities leading to primary ovarian insufficiency (e.g., Turner syndrome) 3
    • Anatomical abnormalities (e.g., Müllerian agenesis, transverse vaginal septum, imperforate hymen) 4

Secondary Amenorrhea

Secondary amenorrhea is defined as:

  • Cessation of regular menses for 3 months or irregular menses for 6 months 5, 3
  • Affects approximately 3-4% of women in the general population 5

Major Causes of Amenorrhea

1. Functional Hypothalamic Amenorrhea (FHA)

  • Accounts for 20-35% of secondary amenorrhea cases 5
  • Characterized by chronic anovulation without identifiable organic causes 5
  • Caused by functional reduction in GnRH pulsatile secretion leading to decreased LH pulses 5
  • Main contributing factors:
    • Stress and increased stress sensitivity 5
    • Vigorous exercise patterns 5
    • Weight loss and low BMI 5
    • Psychological disorders 5
    • Caloric restriction or energy deficit 5
  • Laboratory findings: low/normal FSH and LH levels 5
  • Patients with hypothalamic amenorrhea should be evaluated for eating disorders and are at risk for decreased bone density 3

2. Polycystic Ovary Syndrome (PCOS)

  • One of the most common causes of secondary amenorrhea 5
  • Characterized by:
    • Polycystic ovarian morphology (≥20 follicles of 2-9mm per ovary or ovarian volume >10ml) 2
    • LH:FSH ratio >2 5
    • Hyperandrogenism 6
  • Patients with PCOS are at risk for glucose intolerance, dyslipidemia, and other aspects of metabolic syndrome 3

3. Hyperprolactinemia

  • Accounts for approximately 20% of secondary amenorrhea cases 5
  • Clinical features may include galactorrhea 5
  • Laboratory findings include elevated serum prolactin levels 5
  • May be associated with pituitary adenoma 7
  • Causes include:
    • Medications
    • Pituitary tumors
    • Hypothyroidism
    • Functional hyperprolactinemia in epilepsy patients 6

4. Primary Ovarian Insufficiency (POI)

  • Laboratory findings include elevated FSH and LH levels 5
  • Patients can maintain unpredictable ovarian function and should not be presumed infertile 3, 1
  • May occur earlier in women with epilepsy than in the general population 6

5. Thyroid Dysfunction

  • Both hypothyroidism and hyperthyroidism can cause amenorrhea 5
  • Laboratory findings include abnormal TSH levels 5

6. Advanced Liver Disease

  • Altered estrogen metabolism and disruption of hypothalamic-pituitary axis 6
  • Low follicle-stimulating hormone and luteinizing hormone leading to anovulation, amenorrhea, and infertility 6
  • Amenorrhea or oligomenorrhea seen in >25% of women with advanced liver disease and nearly 75% of premenopausal women awaiting liver transplant 6

7. Anatomical Causes (Primary Amenorrhea)

  • Müllerian agenesis 4
  • Transverse vaginal septum 4
  • Imperforate hymen 4

8. Other Causes

  • Pregnancy (most common physiological cause) 7
  • Lactation 7
  • Medications (including certain antiepileptic drugs) 6
  • Chronic diseases 1
  • Chromosomal abnormalities 3

Special Considerations

Epilepsy and Amenorrhea

  • Epilepsy can directly affect the hypothalamic-pituitary axis 6
  • Antiepileptic drugs may decrease or increase biologically active sex hormone levels 6
  • Functional hyperprolactinemia is more common in women with epilepsy 6
  • Left unilateral temporolimbic epilepsy has been associated with PCOS, while right temporolimbic epilepsy with hypothalamic amenorrhea 6

Athletes with Amenorrhea

  • Require evaluation for Relative Energy Deficiency in Sport (RED-S) 2
  • At risk for decreased bone density 5
  • DXA scan recommended for bone mineral density assessment if amenorrhea lasts >6 months 2

FHA-PCOM (Special Entity)

  • Affects 40-47% of women with FHA, featuring characteristics of both FHA and PCOM 5
  • Can be misdiagnosed as PCOS as they fulfill Rotterdam criteria 5
  • Differentiation based on typical FHA triggers, negative progestin challenge, and lower LH levels 5

Diagnostic Approach

  • First step: pregnancy test 5
  • Initial laboratory evaluation: serum FSH, LH, prolactin, and TSH levels 5
  • Pelvic ultrasound to evaluate for PCOM and uterine abnormalities 5
  • Additional testing may include androgen profile for suspected PCOS 5
  • Progestin challenge test can be used to determine estrogen status 5

Amenorrhea should be viewed as a symptom rather than a diagnosis, requiring thorough evaluation to identify the underlying cause and prevent long-term complications such as osteoporosis, endometrial hyperplasia, and heart disease 4, 1, 8.

References

Guideline

Evaluation and Management of Primary Amenorrhea

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Amenorrhea: an approach to diagnosis and management.

American family physician, 2013

Research

Amenorrhea: evaluation and treatment.

American family physician, 2006

Guideline

Major Causes of Secondary Amenorrhea

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Etiology and management of amenorrhea in adolescent and young adult women.

Current problems in pediatric and adolescent health care, 2022

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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