What labs are used to diagnose celiac disease?

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Last updated: October 31, 2025View editorial policy

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Diagnostic Labs for Celiac Disease

The primary diagnostic test for celiac disease is IgA tissue transglutaminase antibody (tTG-IgA), which should be performed while the patient is on a gluten-containing diet, followed by intestinal biopsy for confirmation in adults. 1

Initial Serological Testing

  • IgA tissue transglutaminase antibody (tTG-IgA) is the preferred first-line screening test with high sensitivity (90-96%) and specificity (>95%) 1, 2
  • Total IgA levels should be measured simultaneously to rule out IgA deficiency, which could cause false-negative results 3, 1
  • Testing must be performed while the patient is on a gluten-containing diet (at least 10g daily for 6-8 weeks) to avoid false-negative results 1, 2
  • In patients with tTG-IgA levels >10x upper limit of normal, IgA endomysial antibody (EMA-IgA) should be performed as a confirmatory test with excellent specificity (99.6%) 1, 4

Testing in Special Populations

  • In IgA-deficient patients, IgG-based tests should be used instead:
    • IgG deamidated gliadin peptide (DGP-IgG) 1, 4
    • IgG tissue transglutaminase (tTG-IgG) 1
  • In children under 2 years of age, tTG-IgA testing should be combined with IgG and IgA deamidated gliadin peptides for improved sensitivity 3, 2
  • Antibodies directed against native gliadin are no longer recommended for primary detection due to poor sensitivity and specificity 3, 5

Confirmatory Testing

  • Upper endoscopy with small bowel biopsy remains the gold standard for diagnosis in adults 1, 2
  • Multiple duodenal biopsies are required:
    • 1-2 samples from the duodenal bulb 3
    • At least 4 samples from the distal duodenum 3, 1
  • Characteristic histologic findings include villous atrophy, crypt lengthening, and increased intraepithelial lymphocytes 1, 6

Genetic Testing

  • HLA-DQ2 and HLA-DQ8 testing has high negative predictive value (>99%) and is useful in specific scenarios:
    • When celiac disease is strongly suspected despite negative serology 1, 2
    • In patients with equivocal small-bowel histologic findings 3
    • In patients already on a gluten-free diet without prior testing 3, 1
    • In patients with discrepant celiac-specific serology and histology 3

Biopsy-Avoidance Strategies

  • In children with tTG-IgA ≥10× upper limit of normal, positive EMA-IgA, and positive HLA-DQ2/DQ8, biopsy may be avoided according to pediatric guidelines 1, 2
  • During the COVID-19 pandemic, similar non-biopsy protocols were temporarily adopted for adults with high tTG-IgA levels 3

Common Pitfalls to Avoid

  • Initiating a gluten-free diet before completing diagnostic testing can lead to false-negative results 1, 4
  • Relying solely on serology without biopsy confirmation can lead to misdiagnosis in adults 1, 4
  • Lymphocytic infiltration of the intestinal epithelium without villous atrophy is not specific for celiac disease and requires consideration of other causes 3
  • Serological tests have poor sensitivity (<50%) for detecting persistent villous atrophy in patients already on a gluten-free diet 7
  • Improvement of symptoms after starting a gluten-free diet has a low positive predictive value for celiac disease and should not be used for diagnosis without supportive evidence 3

Follow-up Testing

  • Follow-up serology should be performed at 6 and 12 months after diagnosis, and yearly thereafter 1
  • Negative serology after treatment does not guarantee intestinal mucosal healing 1, 7
  • Persistently elevated antibodies usually indicate ongoing gluten exposure 1, 4

References

Guideline

Celiac Disease Diagnosis and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Celiac Disease Diagnosis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Evaluating Discordant Celiac Disease Test Results

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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