What is the typical approach to an autoimmune workup?

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Typical Autoimmune Workup

The typical autoimmune workup should include a complete blood count with differential, inflammatory markers (ESR and CRP), comprehensive metabolic panel, and autoantibody screening (ANA, RF, anti-CCP), with additional disease-specific testing guided by clinical presentation. 1, 2

Initial Clinical Assessment

History and Physical Examination

  • Focus on joint pain patterns, duration, and morning stiffness to identify inflammatory arthritis 1, 3
  • Document history of recurrent infections, which may suggest underlying immune dysregulation 4, 1
  • Obtain family history of autoimmune disorders, as genetic predisposition is common 4, 1
  • Examine all joints systematically for swelling, warmth, and range of motion limitations 1, 3
  • Assess skin for rashes, photosensitivity, ulcers, or other manifestations of systemic disease 1, 5
  • Evaluate spleen size, as splenomegaly may indicate systemic autoimmune involvement 4, 1

Core Laboratory Testing

Basic Blood Work

  • Complete blood count with differential to identify cytopenias (anemia, leukopenia, thrombocytopenia) common in autoimmune conditions 1, 2, 6
  • Inflammatory markers: ESR and CRP to assess disease activity and degree of systemic inflammation 4, 1, 2, 3
  • Comprehensive metabolic panel including liver function tests (AST, ALT, alkaline phosphatase, bilirubin) and kidney function (creatinine, BUN) to evaluate organ involvement 1, 2

Autoantibody Screening Panel

  • Antinuclear antibodies (ANA) as the primary screening tool for systemic autoimmune diseases 1, 2, 6
  • Rheumatoid factor (RF) and anti-cyclic citrullinated peptide (anti-CCP) antibodies for suspected inflammatory arthritis 1, 2, 3
  • Total IgE and IgG-anti-thyroid peroxidase (anti-TPO) levels, as low total IgE with elevated anti-TPO suggests autoimmune mechanisms 4

Disease-Specific Testing

When Systemic Lupus Erythematosus is Suspected

  • Anti-dsDNA, anti-Smith, anti-RNP, anti-SSA (Ro), and anti-SSB (La) antibodies 2
  • Complement levels (C3, C4, CH50) to assess complement consumption 2

When Systemic Sclerosis is Suspected

  • Anti-centromere, anti-Scl-70 (topoisomerase), and anti-RNA polymerase III antibodies 2

When Autoimmune Hepatitis is Suspected

  • Anti-smooth muscle antibodies, anti-liver kidney microsomal antibodies, and serum immunoglobulins (IgG, IgA, IgM) 1, 2
  • Liver biopsy for definitive diagnosis 1

When Inflammatory Myositis is Suspected

  • Muscle enzymes: creatine kinase (CK), AST, ALT, lactate dehydrogenase (LDH), and aldolase 4, 1, 2
  • Troponin to evaluate for myocardial involvement 4, 1, 2
  • Anti-Jo-1 and other myositis-specific antibodies 2
  • Muscle MRI for localization of inflammation 1

When Autoimmune Thyroid Disease is Suspected

  • Thyroid function tests (TSH, free T4) and thyroid antibodies (anti-TPO, anti-thyroglobulin) 2

When Spondyloarthropathy is Suspected

  • HLA-B27 typing 2

Additional Considerations

Pre-Treatment Infectious Disease Screening

  • HIV, hepatitis B, hepatitis C, and tuberculosis screening must be performed before initiating immunosuppressive therapy 4, 1, 2
  • This prevents reactivation of latent infections during treatment 4, 1

Specialized Testing Based on Clinical Context

  • Cryoglobulins and serum protein electrophoresis for suspected cryoglobulinemic vasculitis 2
  • Iron studies (ferritin, transferrin saturation) to exclude hemochromatosis when liver enzymes are elevated 2
  • Celiac disease antibodies (tissue transglutaminase, endomysial antibodies) in appropriate clinical settings 2

Imaging Studies

  • Joint radiographs for suspected inflammatory arthritis to assess for erosive changes 1
  • Abdominal ultrasound or CT scan to evaluate for organomegaly in suspected systemic disease 1
  • Chest radiograph to evaluate for thymoma or pulmonary involvement 4

Critical Pitfalls to Avoid

  • Never rely solely on autoantibody testing without clinical correlation, as positive results may occur in healthy individuals 1
  • Do not delay treatment while awaiting complete diagnostic workup in severe presentations, as early intervention prevents irreversible organ damage 1, 3
  • Always screen for infectious diseases before starting immunosuppression, as failure to do so risks life-threatening opportunistic infections 4, 1
  • Perform autoantibody testing before initiating immunosuppressive therapy when possible, as treatment may affect results and complicate diagnosis 2

Management Pathway

  • Early referral to rheumatology is essential for suspected autoimmune disease to ensure appropriate diagnosis and treatment 1, 3
  • Initial corticosteroid therapy (prednisone 0.5-1 mg/kg for severe disease, 10-20 mg/day for moderate disease) should be initiated based on disease severity 1, 3
  • Serial monitoring of inflammatory markers (ESR, CRP) and clinical symptoms is necessary to assess treatment response 2, 3

References

Guideline

Diagnostic Work-up for Autoimmune Diseases

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Autoimmune Disease Diagnosis and Monitoring

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Inflammation Workup and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Diagnostic testing and interpretation of tests for autoimmunity.

The Journal of allergy and clinical immunology, 2010

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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