What is the role of Atovaquone in Pneumocystis jirovecii pneumonia (PJP) prophylaxis?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: November 12, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Atovaquone for PJP Prophylaxis

Atovaquone 1500 mg daily is an effective second-line agent for PJP prophylaxis in patients who cannot tolerate trimethoprim-sulfamethoxazole, though it is less effective than TMP-SMX and requires administration with food to ensure adequate absorption. 1, 2

Indications and Patient Selection

  • Atovaquone is FDA-approved for PJP prophylaxis in adults and adolescents aged 13 years and older who cannot tolerate TMP-SMX 2
  • The European League Against Rheumatism and National Comprehensive Cancer Network recommend atovaquone 1500 mg daily as a first-line alternative when TMP-SMX is not tolerated 1, 3
  • All alternative agents, including atovaquone, are less effective than TMP-SMX, which remains the gold standard 1

Dosing and Administration

  • The FDA-approved prophylaxis dose is 1500 mg (10 mL) once daily, administered with food 2
  • Food increases atovaquone bioavailability 1.4-fold compared to fasting state; failure to take with food may result in subtherapeutic levels and prophylaxis failure 4, 2
  • For treatment of mild-to-moderate PCP (not prophylaxis), the dose is 750 mg twice daily for 21 days 2

Critical Administration Pitfall

  • Atovaquone must be taken with food—this is non-negotiable for adequate absorption 2
  • Consider alternative agents (dapsone or aerosolized pentamidine) in patients with gastrointestinal disorders, malabsorption, or inability to take medications with food 2

Evidence on Low-Dose Atovaquone

There is conflicting evidence regarding lower doses:

  • A 2023 study in hematologic malignancy patients showed that 750 mg once daily prevented PJP in 85 patients over a median 150 days, with zero breakthrough infections 5
  • However, a 2004 report documented prophylaxis failures in transplant recipients receiving low-dose atovaquone 6
  • A 2017 pharmacokinetic study found that 58% of immunocompromised patients on standard dosing had trough levels <15 μg/mL, a threshold associated with poor treatment response 7

Given the FDA approval and pharmacokinetic concerns, the standard 1500 mg daily dose should be used rather than lower doses, particularly in high-risk populations like transplant recipients. 2, 6

Bioavailability Concerns

  • Atovaquone exhibits wide inter-individual variability in absorption, with more than half of immunocompromised patients achieving subtherapeutic levels even on standard dosing 7
  • Plasma concentrations are not affected by co-administration with valaciclovir or cyclosporine, nor by graft-versus-host disease 7
  • The unpredictable absorption raises questions about therapeutic drug monitoring, though this is not routinely performed in clinical practice 7

Comparison to Other Alternatives

When TMP-SMX cannot be used, the hierarchy of alternatives is:

  • Dapsone 100 mg daily is the most well-established alternative per the National Comprehensive Cancer Network, but requires G6PD testing and monitoring for methemoglobinemia 1
  • Aerosolized pentamidine 300 mg monthly via Respirgard II nebulizer is effective but requires monthly healthcare visits 1
  • Atovaquone 1500 mg daily offers the convenience of oral daily dosing without the hematologic monitoring required for dapsone 1, 2

Duration of Prophylaxis

  • Continue prophylaxis for the duration of immunosuppression 3
  • For HIV patients: until CD4+ count >200 cells/μL for at least 3 months 1
  • For transplant recipients: at least 6-12 months post-transplantation 1, 3
  • For patients on corticosteroids: while receiving ≥20 mg prednisone daily or equivalent 1, 3

Re-challenge Considerations

  • A 2017 study in kidney transplant recipients showed that patients switched to atovaquone for non-hypersensitivity reasons (such as cytopenias or renal dysfunction) could be successfully re-challenged with TMP-SMX 8
  • Consider re-challenging with TMP-SMX after the initial adverse event resolves, as TMP-SMX provides superior efficacy and additional protection against bacterial infections 1, 8

Adverse Effects

  • Common adverse reactions include skin rashes (10-15%), nausea, and diarrhea, typically occurring after the first week of therapy 4
  • Elevated liver enzymes may occur; cases of cholestatic hepatitis and fatal liver failure have been reported 2
  • Atovaquone is contraindicated in patients with history of hypersensitivity reactions including angioedema, bronchospasm, throat tightness, or urticaria 2

Limitations

  • Atovaquone does not provide the additional protection against common bacterial infections that TMP-SMX offers 1
  • Clinical experience is limited to mild-to-moderate PCP; efficacy in severe PCP or salvage therapy after TMP-SMX failure has not been established 2
  • One case report from 2023 described successful treatment of severe PCP with atovaquone in an HIV-negative patient, but this remains investigational 9

References

Guideline

PJP Prophylaxis Regimens for Patients with Atovaquone and Sulfa Allergies

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

PJP Prophylaxis in Steroid Users

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Prevention of pneumocystis pneumonia in patients with hematological diseases: Efficacy of low-dose atovaquone.

International journal of clinical pharmacology and therapeutics, 2023

Research

Failure of low-dose atovaquone prophylaxis against Pneumocystis jiroveci infection in transplant recipients.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2004

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.