What are the treatment options for a pilonidal cyst?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: November 18, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Treatment of Pilonidal Cyst

For acute pilonidal abscesses, perform immediate incision and drainage, and for chronic or recurrent disease, definitive surgical excision is required to prevent recurrence. 1

Acute Pilonidal Abscess (First Presentation)

Immediate incision and drainage is the primary treatment for inflamed pilonidal cysts presenting as abscesses 1. This follows the standard approach for all cutaneous abscesses.

When to Add Antibiotics

Add antibiotics active against Staphylococcus aureus only if the patient exhibits systemic inflammatory response syndrome (SIRS) criteria 1:

  • Temperature >38°C or <36°C
  • Tachypnea >24 breaths/minute
  • Tachycardia >90 beats/minute
  • White blood cell count >12,000 or <4,000 cells/µL

Use MRSA-active antibiotics for patients with markedly impaired host defenses or those meeting SIRS criteria 1.

Chronic or Recurrent Pilonidal Disease

A recurrent abscess at a previous site mandates evaluation and definitive surgical management of the underlying pilonidal cyst, as eradication of the disease can be curative 1. Multiple surgical techniques exist, with excision being the most commonly used approach 2.

Surgical Options

  • Excision with open or closed wound healing remains the most widely used method 2
  • Incision and curettage is preferred by some surgeons for superior outcomes regarding morbidity, healing time, recurrence, and cure 2
  • Endoscopic treatment using fistuloscopy demonstrates feasibility with mean healing time of 4 weeks, 7% complication rate, and 9% recurrence rate 3

Alternative Non-Surgical Approaches

Laser hair removal using Nd-YAG laser (1064 nm wavelength) represents an effective alternative to surgery for recurrent disease 4. Patients typically require 4-8 treatments at 30-day intervals, with clinical disappearance of cysts and no recurrence in follow-up 4. This avoids the high postoperative pain, adverse events, and 30% recurrence rate associated with traditional surgery 4.

Recurrence Prevention

Implement a 5-day decolonization regimen for recurrent pilonidal abscesses 1:

  • Twice-daily intranasal mupirocin
  • Daily chlorhexidine washes
  • Daily decontamination of personal items (towels, sheets, clothes)

Post-Surgical Wound Management

For wounds healing by secondary intention after surgical intervention, implement comprehensive wound care early to avoid healing disturbances 5:

  • Appropriate mechanical or autolytic debridement
  • Rinsing with antimicrobial solution
  • Topical hemoglobin application
  • Appropriate primary and secondary dressings

This regimen achieves complete wound closure with excellent aesthetic outcomes when initiated promptly after surgery 5.

Common Pitfall

Do not delay definitive surgical evaluation for recurrent abscesses—repeated incision and drainage without addressing the underlying pilonidal disease leads to continued recurrence 1. The pilonidal cyst itself must be eradicated for cure.

References

Guideline

Treatment of Pilonidal Cyst

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Pilonidal cyst: cause and treatment.

Diseases of the colon and rectum, 2000

Research

BRAZILIAN AND ARGENTINEAN MULTICENTRIC STUDY IN THE SURGICAL MINIMALLY INVASIVE TREATMENT OF PILONIDAL CYST.

Arquivos brasileiros de cirurgia digestiva : ABCD = Brazilian archives of digestive surgery, 2019

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.