How long is antibiotic gastrointestinal (GI) prophylaxis continued after Endoscopic Retrograde Cholangiopancreatography (ERCP)?

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Last updated: November 19, 2025View editorial policy

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Duration of Antibiotic Prophylaxis After ERCP

For most patients undergoing ERCP with successful biliary drainage, antibiotic prophylaxis should be discontinued within 24 hours of the procedure, or a single dose may be sufficient.

Standard Duration for Prophylactic Antibiotics

In patients without established infection who receive prophylactic antibiotics for ERCP, discontinue antibiotics within 24 hours after the procedure. 1 This applies to the vast majority of ERCP cases where complete biliary drainage is achieved and no active infection is present.

  • A single dose of antibiotics at the time of ERCP may be sufficient for antibiotic prophylaxis in standard cases 1
  • Recent evidence from a randomized controlled trial comparing single-dose versus short-course prophylactic antibiotics showed no significant differences in markers of inflammation, transient bacteremia, or infectious sequelae at day 5 after ERCP 1
  • The urologic surgery literature, which shares similar principles for antimicrobial prophylaxis, confirms that prophylaxis should be discontinued within 24 hours of procedure termination in the absence of existing infection 1

Duration for High-Risk Patients and Special Circumstances

For patients with incomplete or difficult biliary drainage, continue antibiotics for 3-5 days post-procedure. 1, 2

  • Patients with primary sclerosing cholangitis (PSC) should receive routine prophylactic antibiotics, with duration guided by drainage success 1, 2
  • Meta-analyses demonstrate that prophylactic antibiotics prevent cholangitis (RR: 0.54), septicemia (RR: 0.35), and bacteremia (RR: 0.50) in high-risk patients 1, 2
  • If there are no signs of systemic inflammation or peritonitis after 3-5 days of treatment, antibiotics should be stopped 1

Duration for Established Infection (Cholangitis)

When cholangitis is present at the time of ERCP, this represents therapeutic rather than prophylactic antibiotic use, and duration extends beyond standard prophylaxis.

  • For immunocompetent, non-critically ill patients with adequate source control: 4 days of antibiotic therapy 2
  • For immunocompromised or critically ill patients with adequate source control: up to 7 days based on clinical conditions and inflammatory markers 2
  • Recent evidence supports that antimicrobial therapy for ≤2 days after successful ERCP is adequate in patients with mild and moderate acute cholangitis 3

Key Clinical Considerations

Complete biliary drainage is the most important factor influencing antibiotic duration. 4

  • If biliary drainage remains incomplete after ERCP, continue antibiotics until obstruction is relieved, with a maximum duration of 7 days 4
  • Monitor for signs of infection including fever, increased white blood cell count, and C-reactive protein elevation 2
  • Procalcitonin is the most sensitive laboratory test for detection of infection 2
  • Consider bile fluid sampling during ERCP to guide antibiotic treatment if cholangitis occurs despite prophylaxis 1

Common Pitfalls to Avoid

  • Do not routinely extend antibiotics beyond 24 hours in uncomplicated cases – this increases antimicrobial resistance, morbidity, and healthcare costs without proven benefit 1
  • Do not confuse prophylactic with therapeutic antibiotic use – when infection is present before or develops after ERCP, therapeutic courses (4-7 days) are appropriate 2
  • Do not assume all high-risk patients need extended courses – even in PSC patients, if drainage is complete and no infection develops, prolonged antibiotics are unnecessary 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Post-ERCP Antibiotic Regimen for High-Risk Patients

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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