Common Biliary Pathogens in Cholangitis
Biliary infections in cholangitis are typically polymicrobial, with Gram-negative bacteria predominating, including Escherichia coli, Klebsiella, Pseudomonas, and Bacteroides species, along with Gram-positive organisms such as Enterococcus and Streptococcus species. 1
Primary Bacterial Pathogens
Gram-Negative Organisms (Most Common)
- E. coli remains the most frequently isolated pathogen in cholangitis 2, 3, 4
- Klebsiella species are consistently among the top three pathogens 1, 2, 4
- Pseudomonas aeruginosa is particularly important in healthcare-associated infections and patients with indwelling biliary tubes 1, 2
- Bacteroides species (including B. fragilis) are recovered in 15-30% of patients, especially those with biliary-enteric anastomoses 1, 2
Gram-Positive Organisms
- Enterococcus species (particularly E. faecalis) are common biliary pathogens, though their pathogenicity remains somewhat controversial 1, 2, 3, 4
- Streptococcus species (including S. pneumoniae and S. pyogenes) are isolated less frequently 1
Healthcare-Associated & Resistant Pathogens
Emerging Resistant Organisms
- Enterobacter species show high resistance rates to multiple antibiotics and are increasingly common in patients with prior biliary instrumentation 2, 5
- Citrobacter species demonstrate significant antibiotic resistance 5
- Pseudomonas species are particularly problematic in patients with indwelling tubes who have received prior antibiotics 2
Special Populations at Risk
- Patients with biliary stents or drainage tubes have higher rates of Enterobacter, Pseudomonas, and yeast infections 2
- Those with previous antibiotic exposure are at increased risk for resistant organisms 1, 2
Fungal Pathogens
Candida Species
- Candida species are isolated from bile in 12-20% of patients with PSC undergoing ERCP, particularly those with advanced disease and high-grade stenosis 1
- Biliary candidiasis is associated with markedly reduced transplant-free survival and increased risk of cholangiocarcinoma 1
- Risk factors include age at diagnosis, number of ERCPs, immunosuppression, and prolonged biliary obstruction 1, 6, 7
- Aspergillus is rarely detected in biliary infections 1
Initial Empiric Antibiotic Coverage
Mild-to-Moderate Community-Acquired Cholangitis
- Aminopenicillin/beta-lactamase inhibitor (e.g., ampicillin-sulbactam) provides adequate oral coverage for Gram-negative and Gram-positive organisms 1, 6
Severe or Healthcare-Associated Cholangitis
- Piperacillin-tazobactam (6g/0.75g loading, then 4g/0.5g every 6 hours) covers Gram-negatives, Gram-positives, and anaerobes without additional agents 6, 7, 8
- Carbapenems (meropenem, imipenem/cilastatin, ertapenem) are alternatives for critically ill patients or those with ESBL risk factors 6, 7
- Third-generation cephalosporins require additional anaerobic coverage 1
Additional Coverage Considerations
- Aminoglycosides (amikacin) should be added for enhanced Gram-negative coverage in septic shock 6, 7
- Vancomycin or linezolid may be added for Enterococcus coverage in patients with sepsis who fail to respond to initial therapy 1, 6
- Fluconazole should be considered in immunocompromised patients, those with prolonged obstruction, or delayed diagnosis 6, 7
Critical Pitfalls to Avoid
- Fluoroquinolones should be avoided as first-line therapy due to high resistance rates and unfavorable side effects, despite their excellent biliary penetration 1
- Anaerobic coverage is essential in patients with biliary-enteric anastomoses, elderly patients, or those in serious clinical condition 1, 3
- Antibiotics alone are insufficient without biliary decompression—obstruction must be addressed for successful treatment 1, 6, 7
- Fungal infection must be considered in immunocompromised patients or those with persistent symptoms despite appropriate bacterial coverage 1, 6, 7