What is the workup and treatment for primary Central Nervous System (CNS) Lymphoma?

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Last updated: November 24, 2025View editorial policy

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Workup of Primary CNS Lymphoma

The workup of primary CNS lymphoma requires contrast-enhanced MRI of the brain, stereotactic biopsy for histopathological confirmation (avoiding corticosteroids beforehand), comprehensive CSF analysis with flow cytometry, ophthalmological examination, and systemic staging with FDG-PET/CT to exclude secondary CNS involvement. 1

Initial Imaging

  • Contrast-enhanced cranial MRI is the mandatory imaging modality using the IPCG protocol (3T or 1.5T) 1
  • Typical MRI features include lesions that are hypointense on T1, isointense to hypointense on T2, with reduced apparent diffusion coefficient (ADC), variable surrounding edema, and homogeneous strong enhancement 1
  • Common locations: frontal lobe and brain hemispheres (38%), thalamus/basal ganglia (16%), corpus callosum (14%), periventricular regions (12%), cerebellum (9%), and meninges (16%) 1
  • Repeat brain MRI after biopsy and ideally within 14 days before starting treatment due to extremely high proliferative activity (>90% Ki-67 expression) that could affect response assessment 1

Tissue Diagnosis

Histopathological confirmation is absolutely required before treatment initiation. 1

  • Stereotactic biopsy is the preferred method for brain lesions 1
  • Avoid corticosteroids before biopsy whenever clinically possible as they can cause lymphoma regression and confound diagnosis 1
    • If clinical deterioration occurs, perform urgent biopsy before starting corticosteroids 1
  • Tumor resection is NOT recommended except in carefully selected patients with rapidly increasing intracranial pressure who may benefit from surgical debulking at the time of biopsy 1

Pathology Requirements

  • Minimum immunohistochemistry panel: CD20, CD3, CD10, Bcl-6, Bcl-2, MUM1, and Ki-67 antibodies 1
  • Molecular analysis of Ig heavy and light chain loci can be used when diagnosis is difficult 1

Alternative When Biopsy is Contraindicated

  • CSF examination is a valid alternative when brain biopsy is contraindicated 1
  • CSF should include flow cytometry, MYD88 L265P mutation analysis, and IL-10 levels to support diagnosis 1

CNS Compartment Assessment

Cerebrospinal Fluid Analysis (All Patients)

CSF analysis is advised in every patient with suspected or confirmed PCNSL unless clinically contraindicated. 1

  • Physical-chemical analysis (normal glucose, increased leukocytes, high protein suggest meningeal dissemination) 1
  • Conventional cytology PLUS flow cytometry (cytology alone underestimates CSF involvement) 1
  • MYD88 L265P mutation analysis 1
  • IL-10 level 1
  • IgVH clonality in selected cases 1

Spinal Cord Imaging

  • Perform spinal MRI only in symptomatic patients or if CSF is positive 1
  • Spinal cord parenchymal involvement is rare (1%) 1

Ophthalmological Evaluation (All Patients)

Every patient must undergo ophthalmological assessment by slit-lamp fundoscopy to exclude intraocular involvement. 1

  • Retinal angiography or tomography is advisable when available 1
  • Vitrectomy is NOT mandatory in patients with histopathological diagnosis from brain biopsy 1
  • If vitrectomy performed: conventional cytology, flow cytometry, MYD88 mutation analysis, IL-6 and IL-10 levels 1

Systemic Staging (Exclude Secondary CNS Lymphoma)

All patients must undergo systemic imaging to exclude extra-CNS disease, as primary and secondary CNS lymphoma have different prognoses and require different treatment protocols. 1

Preferred Approach

  • FDG-PET combined with contrast-enhanced CT scan (identifies systemic disease in 4-12% of presumptive PCNSL cases) 1

Alternative When PET Not Available

  • Contrast-enhanced total-body CT scan 1
  • Bone marrow aspiration and biopsy 1
  • Testicular ultrasound 1

Pre-Treatment Assessment

Before starting treatment, assess the following: 1

  • Bone marrow status 1
  • Cardiac function (left ventricular ejection fraction >45% required for high-dose methotrexate) 1
  • Liver function 1
  • Renal function (creatinine clearance >50 ml/min required for high-dose methotrexate) 1

Prognostic Scoring

  • Two validated scoring systems: International Extranodal Lymphoma Study Group (IELSG) score and Memorial Sloan Kettering Cancer Center prognostic score 1
  • Age is the main prognostic factor, though optimal age cut-off remains undefined 1

Critical Pitfalls to Avoid

  • Never start corticosteroids before obtaining tissue diagnosis unless life-threatening situation requires urgent biopsy first 1
  • Do not perform tumor resection as it provides no survival benefit and increases morbidity 1
  • Do not rely on conventional cytology alone for CSF assessment—always add flow cytometry 1
  • Do not skip systemic staging—4-12% of presumed PCNSL cases actually have systemic disease requiring different treatment 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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