What are the long-term effects of proton pump inhibitors (PPIs) on women?

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Last updated: November 24, 2025View editorial policy

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Long-Term Effects of Proton Pump Inhibitors in Women

The long-term effects of PPIs are largely similar across sexes, and while observational studies have suggested associations with various adverse outcomes, randomized controlled trials have not confirmed increased adverse events with long-term PPI use. 1

Evidence-Based Safety Profile

Established Safety from High-Quality Evidence

  • Randomized controlled trials comparing PPIs with placebo have not demonstrated a higher rate of any adverse event among PPI users, despite numerous observational associations reported in the literature 2, 1
  • The PPIs as a class are remarkably safe and effective, with serious adverse events being extremely rare 3
  • Most reported associations (fractures, pneumonia, kidney disease, dementia) come from observational studies that cannot establish causality and are subject to significant confounding 2, 4

Potential Adverse Effects from Observational Data

While not proven causal, the following associations have been reported:

Gastrointestinal Effects:

  • Vitamin and mineral deficiencies (B12, C, iron, calcium, magnesium) may occur due to hypochlorhydria affecting absorption 5
  • Fundic gland polyps can develop but typically regress after PPI discontinuation 3
  • Small intestinal bacterial overgrowth (SIBO) and increased risk of enteric infections including C. difficile 5, 6
  • Rebound acid hypersecretion is a physiologic phenomenon that commonly occurs after discontinuation, causing transient upper GI symptoms 2, 1

Infectious Complications:

  • Community-acquired pneumonia risk may be increased (67% higher odds in meta-analysis), though hospital-acquired pneumonia risk is not elevated 3, 7
  • Enteric, respiratory, and urinary tract infections may be more common due to acid suppression 5

Musculoskeletal Effects:

  • Hip fracture risk showed 42% higher odds in meta-analysis, though absolute risk remains low and causality unproven 7, 4
  • There is insufficient data to support particular caution in prescribing PPIs solely due to fracture concerns 3

Other Reported Associations:

  • Colorectal cancer showed 55% higher odds in observational data, but this association is not established 7
  • Hypomagnesemia has been reported with long-term use 4
  • Interstitial nephritis is extremely rare 3, 4

Critical Clinical Considerations for Women

Pregnancy-Specific Concerns:

  • Long-term PPI use by pregnant patients may impose potential risk of congenital malformations 5
  • Lifestyle modifications and antacids are recommended as first-line treatment in pregnancy, with omeprazole reserved as the safest PPI choice for severe GERD 5

Vitamin B12 Deficiency:

  • Long-term PPI use does not lead to vitamin B12 deficiencies except possibly in elderly patients or those on high doses for prolonged periods (such as Zollinger-Ellison syndrome) 3

When Long-Term PPI Use is Appropriate

Do NOT discontinue PPIs in these populations:

  • Patients with Barrett's esophagus (reduces esophageal adenocarcinoma risk) 2, 1
  • Severe erosive esophagitis (Los Angeles Classification grade C/D) 2, 1
  • History of esophageal ulcer or peptic stricture 2, 1
  • Eosinophilic esophagitis with PPI response 2, 1
  • Idiopathic pulmonary fibrosis (reduces disease progression) 2, 1
  • High-risk patients for upper GI bleeding: those with history of GI bleeding, multiple antithrombotics, or NSAID/aspirin use with additional risk factors (age >60 years, severe comorbidity, concurrent anticoagulants, or corticosteroids) 2, 1

Practical Management Algorithm

Step 1: Regular Indication Review

  • All patients on PPIs should have regular review of ongoing indications, ideally by their primary care provider 2, 1

Step 2: Risk Assessment Before De-prescribing

  • Assess upper GI bleeding risk using evidence-based criteria before considering discontinuation 2, 1
  • Document whether patient has definitive indication for chronic use 2, 1

Step 3: Dose Optimization

  • Patients on twice-daily dosing without complicated disease should be stepped down to once-daily dosing 2, 1

Step 4: De-prescribing Strategy (if appropriate)

  • Either dose tapering or abrupt discontinuation can be used 2, 1
  • Warn patients about rebound acid hypersecretion causing transient upper GI symptoms that may require temporary resumption 2, 1

Critical Pitfall to Avoid

The presence of a PPI-associated adverse event or risk factors for adverse events should NOT be an independent indication for PPI withdrawal 2. The decision to discontinue should be based solely on lack of indication for use, not concern about potential adverse effects 2, 1. The absolute risk of all complications attributed to PPIs is low, and patients who need long-term therapy should have clear discussion of available data 4.

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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