What are the causes of diarrhea?

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Last updated: November 30, 2025View editorial policy

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Causes of Diarrhea

Diarrhea has infectious and non-infectious causes, with the specific etiology varying by duration (acute vs. chronic), patient immune status, and epidemiologic exposures.

Infectious Causes

Viral Pathogens

  • Norovirus is the most common cause of diarrheal disease outbreaks and represents a major source of acute gastroenteritis across all age groups 1
  • Rotavirus is the most common cause of acute diarrhea among children, accounting for one-fourth of all pediatric cases 1
  • Other viral causes include Norwalk-like viruses, enteric adenoviruses, astroviruses, and caliciviruses 1
  • Rotavirus disease and hospitalizations have been reduced markedly since licensure of ACIP-recommended rotavirus vaccines 1

Bacterial Pathogens

  • Important bacterial causes include Salmonella, Shigella, Yersinia, Campylobacter, and pathogenic strains of Escherichia coli (including ETEC, EPEC, EAEC, and STEC) 1
  • The majority of traveler's diarrhea is caused by bacterial pathogens and, to a lesser extent, viral pathogens, typically lasting <7 days 1
  • Clostridium difficile is of increasing concern, especially in travelers with recent antimicrobial therapy 1
  • Vibrio vulnificus infections occur in patients with chronic liver disease, iron overload states, or other immunocompromising conditions 1

Parasitic Pathogens

  • Common parasitic causes include Giardia, Cryptosporidium, and Entamoeba histolytica 1
  • Approximately 10% of traveler's diarrhea is caused by parasitic infections, which can persist for weeks to months, with giardiasis being the most common 1
  • Cyclospora and Cystoisospora (formerly Isospora belli) are additional parasitic causes 1

Non-Infectious Causes

Medication-Induced

  • Up to 4% of chronic diarrhea cases are medication-induced, particularly from magnesium-containing products, antihypertensives, NSAIDs, antibiotics, and antiarrhythmics 2
  • Adverse effects of antiretroviral therapy or chemotherapy may account for persistent diarrhea in immunocompromised hosts 1

Malabsorptive Disorders

  • Chronic pancreatitis is a primary cause of steatorrhea presenting as pale, bulky, malodorous stools due to inadequate fat digestion 2
  • Pancreatic carcinoma and cystic fibrosis similarly impair pancreatic enzyme secretion, leading to fat malabsorption 2
  • Celiac disease is the most common small bowel enteropathy in Western populations, frequently presenting with steatorrhea 2
  • Bile acid malabsorption produces diarrhea that characteristically occurs after meals and typically responds to fasting, particularly common after terminal ileum resection or cholecystectomy 2

Endocrine and Metabolic

  • Hyperthyroidism causes diarrhea through endocrine effects on gut motility 2
  • Diabetes mellitus causes diarrhea via multiple mechanisms: autonomic neuropathy, bacterial overgrowth, bile acid malabsorption, and medication effects 2

Factitious Diarrhea

  • Factitious diarrhea represents 20% of cases at tertiary referral centers, making it the most common cause of diarrhea of previously undetermined origin 3
  • In patients who have undergone extensive evaluation, 33% were found to be taking laxatives or diuretics 3
  • A measured stool osmolality significantly below normal plasma osmolality (200 vs. 290 mosmol/L) indicates dilutional factitious diarrhea 3

Special Populations

Immunocompromised Patients

  • Diarrhea in immunocompromised patients may involve bacterial, viral, parasitic, and fungal pathogens depending on underlying immune status 1
  • HIV-infected patients are at risk for enteroaggregative E. coli, Cryptosporidium, microsporidia, Cystoisospora belli, CMV, and Mycobacterium avium complex (MAC) 1
  • Diarrhea caused by Cryptosporidium, Cyclospora, Cystoisospora, or microsporidia is more likely to be severe, chronic, or relapsing in immunocompromised people, particularly those with impaired cell-mediated immunity 1
  • Chronic and severe norovirus infection has been reported in patients receiving immunosuppression following organ transplantation 1

High-Risk Groups for Specific Pathogens

  • Risk factors for invasive nontyphoidal Salmonella infection include young and advanced age, HIV infection, cytotoxic chemotherapy, malnutrition, hemoglobinopathies, recent malaria, and cirrhosis 1
  • Yersinia enterocolitica higher risk groups include young African American and Asian children (especially during winter), diabetics, and those with chronic liver disease, malnutrition, or iron-overload states 1

Clinical Pitfalls

  • Microscopic examination of stool for ova and parasites is unlikely to include testing for Cryptosporidium and Cyclospora; clinicians should specifically request these tests 1
  • In patients with diarrhea lasting ≥30 days, testing for HIV may be appropriate 1
  • Normal vital signs and physical examination despite reported severe symptoms are consistent with factitious diarrhea 3
  • Multipathogen nucleic acid amplification tests can detect multiple pathogens simultaneously, but the clinical significance of detecting multiple pathogens or nucleic acid alone (versus viable organisms) remains unclear 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Causes and Diagnostic Approach for Yellow Stool

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Factitious Diarrhea Diagnosis and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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