What causes irregular menstruation?

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Reasons for Irregular Menstruation

Polycystic ovary syndrome (PCOS) is the single most common cause of irregular menstrual cycles, affecting approximately 4-6% of women in the general population, followed by functional hypothalamic amenorrhea (FHA), hyperprolactinemia, and thyroid dysfunction. 1

Primary Endocrine Causes

PCOS (Most Common)

  • PCOS accounts for the majority of irregular menstrual cases and is characterized by elevated androgens, irregular or absent periods, and polycystic ovarian morphology on ultrasound. 1
  • Laboratory findings typically show an LH:FSH ratio >2, which strongly suggests PCOS. 1
  • The prevalence increases to 10-25% in women with temporal lobe epilepsy. 2
  • PCOS is characterized by hyperandrogenic chronic anovulation with acceleration of pulsatile GnRH secretion. 2

Functional Hypothalamic Amenorrhea (FHA)

  • FHA accounts for 20-35% of secondary amenorrhea cases and is caused by functional reduction in GnRH pulsatile secretion. 1
  • Main contributing factors include stress and increased stress sensitivity, vigorous exercise patterns, weight loss and low BMI, psychological disorders, and caloric restriction or energy deficit. 2
  • In athletes, FHA is part of the female athlete triad or Relative Energy Deficiency in Sport (RED-S). 2
  • Laboratory findings include low/normal FSH and LH levels and negative progestin challenge test. 3

Hyperprolactinemia

  • Hyperprolactinemia accounts for approximately 20% of secondary amenorrhea cases, causing menstrual irregularities through elevated serum prolactin levels. 1
  • Causes include pituitary adenomas, medications, hypothyroidism, and chronic renal failure. 2
  • Clinical features may include galactorrhea. 3
  • Prolactin levels >20 μg/L are considered abnormal, and pituitary MRI may be indicated if clinical features suggest hypothalamic-pituitary axis abnormality. 1

Thyroid Dysfunction

  • Both hypothyroidism and hyperthyroidism can cause menstrual irregularities by affecting the hypothalamic-pituitary-ovarian axis. 1
  • Altered thyroid hormone levels disrupt the hypothalamic-pituitary-ovarian axis. 2

Primary Ovarian Insufficiency (POI)

  • POI is characterized by elevated FSH (>35 IU/L) and LH (>11 IU/L) levels. 1
  • Patients can maintain unpredictable ovarian function and should not be presumed infertile. 1

Additional Medical Conditions

Chronic Liver Disease

  • Advanced liver disease causes menstrual irregularities in >25% of women through altered estrogen metabolism and disruption of the hypothalamic-pituitary axis. 1

Medication-Induced Causes

  • Oral contraceptives frequently induce irregular bleeding patterns, especially during the first three months of use. 1
  • Delayed application or detachment of contraceptive patches for ≥48 hours can cause delayed periods and requires back-up contraception until a patch has been worn for 7 consecutive days. 1

Critical Diagnostic Pitfall: FHA-PCOM vs. True PCOS

This is the most commonly missed diagnosis that leads to inappropriate treatment:

  • Approximately 40-47% of women with FHA have polycystic ovarian morphology (FHA-PCOM), which can be misdiagnosed as PCOS. 1
  • This distinction is critical because FHA-PCOM requires correction of energy deficit as primary treatment, not PCOS-directed therapy. 1
  • FHA-PCOM patients have higher BMI than FHA-non-PCOM patients, higher AMH and testosterone levels, higher LH response to GnRH test, and lower SHBG levels. 3
  • Key differentiating features in FHA-PCOM include history of energy deficit (calorie restriction/dieting), low or normal BMI (lean body type), and absence of hyperandrogenic symptoms (no hirsutism, no hair loss). 3
  • Laboratory features expected in FHA-PCOM include low estradiol levels with negative progestin challenge test, low or low-normal LH and FSH (not the elevated LH:FSH ratio seen in PCOS), and normal or only mildly elevated androgens. 3

Health Consequences of Irregular Menstruation

Bone Health

  • Decreased bone mineral density and increased risk of osteoporosis are major complications of irregular menses, particularly in hypoestrogenic states. 1
  • Patients with FHA are at particular risk for decreased bone density. 3

Cardiovascular and Metabolic Risk

  • Women with menstrual disorders have a higher risk of developing hypertension and other cardiometabolic risk factors. 1
  • Women with irregular menstrual cycles have 20% higher risk of developing heart disease and 17% higher risk of diabetes compared with those with regular menstrual cycles. 4

Diagnostic Approach

Initial Evaluation

  • Pregnancy test should be the first step in evaluating irregular menstruation. 1
  • Obtain menstrual chart for at least 6 months to document cycle patterns. 1

Laboratory Workup

  • Initial workup should include serum FSH, LH, prolactin, and TSH levels. 1
  • LH and FSH should be measured based on an average of three estimations taken 20 minutes apart between day 3 and 6 of the cycle. 1
  • Progesterone measurement during mid-luteal phase can indicate anovulation, commonly caused by PCOS, FHA, or hyperprolactinemia. 1
  • Additional testing may include androgen profile for suspected PCOS. 3
  • Progestin challenge test can be used to determine estrogen status. 3

Imaging

  • Pelvic ultrasound should be performed to evaluate for polycystic ovarian morphology and uterine abnormalities. 3

Clinical Red Flags

  • Evaluate for eating disorders, excessive exercise, and psychological stressors in suspected FHA. 1
  • Screen for obesity and truncal obesity, assessing menstrual regularity in cases of cycle disturbance. 1
  • Look for hirsutism and check for galactorrhea, which may indicate hyperandrogenism requiring investigation. 1

References

Guideline

Causes and Consequences of Irregular Menstruation

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Causes and Consequences of Irregular Menses

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Major Causes of Secondary Amenorrhea

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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