What is the best way to test for Herpes Simplex Virus (HSV)?

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Last updated: December 7, 2025View editorial policy

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Best Way to Test for HSV

For patients with active genital lesions, nucleic acid amplification tests (NAAT/PCR) are the first-line diagnostic test due to superior sensitivity (11-71% better than viral culture) and the ability to simultaneously detect and differentiate HSV-1 from HSV-2. 1, 2

Testing Strategy Based on Clinical Presentation

Active Lesions Present

  • Obtain NAAT/PCR from lesion swabs as the preferred diagnostic method, sampling fluid from intact vesicles or the base of ulcers for optimal yield 1, 2
  • NAAT/PCR demonstrates >90% sensitivity and specificity, with most FDA-approved assays performing at this level 1
  • Real-time PCR allows detection and typing in a single reaction tube, completed in approximately 2 hours 1

If NAAT is unavailable due to cost or laboratory limitations:

  • Viral culture is acceptable as a second-line option, though sensitivity drops significantly as lesions heal (>90% for vesicular lesions, 70% for ulcerative lesions, only 27% at crusting stage) 1
  • Culture requires transport on ice and processing within 24 hours, with results taking 24-72 hours (up to 5 days) 1, 2

No Active Lesions Present

  • Use type-specific serologic testing with glycoprotein G-based assays for diagnosis when lesions are absent 1, 2
  • HSV-2 serology has high sensitivity (92%) but specificity issues exist, particularly with low index values 1
  • Do NOT obtain HSV molecular assays in the absence of genital ulcers - intermittent viral shedding makes this approach insensitive 1

Critical Interpretation Guidelines for Serology

HSV-2 Antibody Testing

  • Index values <0.9 are negative, 0.9-1.1 indeterminate, >1.1 positive per manufacturer labeling 1
  • However, specificity is problematic: index values 1.1-2.9 have only 39.8% specificity; values ≥3.0 have 78.6% specificity 1
  • For low positive results (index <3.0), confirm with a second test using different glycoprotein G antigen 3
  • Patients with HSV-1 infection are more likely to have false-positive HSV-2 results with low index values 1

HSV-1 Antibody Testing

  • Current EIA/CLIA assays lack sensitivity (only 70.2% in one study), resulting in frequent false-negatives 1
  • Western blot/immunoblot is the gold standard but has limited availability 1, 3

Important Clinical Pitfalls to Avoid

Window Period Issues

  • Negative serology within 12 weeks of potential exposure may represent the window period - repeat testing after 12 weeks if recent acquisition suspected 1, 3
  • Antibodies develop within several weeks after infection 3

Tests NOT Recommended

  • Direct immunofluorescence assay and Tzanck smear lack sensitivity and should not be used 1, 2
  • HSV-specific IgM testing is unreliable - approximately one-third of patients with recurrent HSV-2 have IgM responses, making it a poor indicator of recent infection 1, 3

Site-Specific Sampling Recommendations

  • Vesicular rash on skin/mucous membranes: NAAT or antigen detection 1
  • Male urethra: NAAT or antigen detection 1
  • Female cervix/urethra: NAAT or antigen detection 1
  • Urine (both sexes): NAAT only 1
  • CSF: NAAT only 1
  • Venous blood: Serological assays for screening or when lesions absent 1

Why HSV Typing Matters

  • Type differentiation is essential - HSV-1 causes up to 50% of first-episode genital herpes but has less frequent recurrences and subclinical shedding compared to HSV-2 2
  • Typing affects counseling regarding natural history, recurrence risk, and transmission probability 1, 2
  • Use assays that differentiate HSV-1 from HSV-2 to provide accurate prognostic information 1

Screening Considerations

  • Widespread screening for HSV antibodies in asymptomatic general population is NOT recommended 2, 3
  • Consider type-specific HSV-2 serology only for high-risk groups: pregnant women at risk near delivery, men who have sex with men, HIV-positive individuals, and sexual partners of known HSV patients 3

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Diagnostic Approach for Genital Herpes

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Screening for Asymptomatic HSV-2 Infection

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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