What is the recommended treatment for bacterial cystitis?

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Last updated: December 11, 2025View editorial policy

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Treatment for Bacterial Cystitis

Nitrofurantoin monohydrate/macrocrystals 100 mg twice daily for 5 days is the recommended first-line treatment for acute uncomplicated bacterial cystitis in most patients. 1

First-Line Treatment Options

The Infectious Diseases Society of America prioritizes nitrofurantoin as first-line therapy due to minimal resistance patterns and limited collateral damage to normal flora, with clinical cure rates of 88-93% and bacterial cure rates of 81-92%. 1

Alternative first-line agents include:

  • Trimethoprim-sulfamethoxazole 160/800 mg twice daily for 3 days - Use ONLY when local E. coli resistance is documented to be <20% or when susceptibility is confirmed. 1, 2 This threshold is critical because efficacy drops dramatically from 84-88% for susceptible strains to only 41-54% for resistant organisms. 1, 2

  • Fosfomycin trometamol 3 g as a single dose - Appropriate alternative with clinical cure rates of approximately 90%, though microbiological cure rates may be slightly lower (78%) compared to nitrofurantoin (86%). 1 This agent requires no dose adjustment for renal impairment and is particularly useful when eGFR is <30 mL/min. 3

  • Pivmecillinam 400 mg twice daily for 3-7 days - Recommended in European countries where available, but not accessible in North America. 1

Second-Line Treatment Options

Fluoroquinolones should be reserved as alternative agents only when first-line options cannot be used. 1 Despite their high efficacy in 3-day regimens (ciprofloxacin, levofloxacin, ofloxacin, norfloxacin), they cause significant collateral damage to normal flora and promote resistance. 1 These agents must be preserved for more serious infections like pyelonephritis. 2

β-Lactam agents (amoxicillin-clavulanate, cefdinir, cefaclor, cefpodoxime-proxetil) in 3-7 day regimens have inferior efficacy and more adverse effects compared to first-line agents, and should only be used when other options are contraindicated. 1

Treatments to Avoid

Never use amoxicillin or ampicillin for empirical treatment due to poor efficacy and high prevalence of antimicrobial resistance worldwide. 1, 4

Special Clinical Scenarios

Patients with Chronic Kidney Disease

  • If eGFR >30 mL/min: Nitrofurantoin 100 mg twice daily for 5 days remains appropriate. 3
  • If eGFR <30 mL/min: Avoid nitrofurantoin due to reduced efficacy and increased toxicity risk; use fosfomycin trometamol 3 g single dose instead. 3
  • Always obtain urine culture with susceptibility testing in CKD patients before initiating therapy to guide appropriate antibiotic selection. 3

Patients with Penicillin and Sulfa Allergies

  • First choice: Fosfomycin trometamol 3 g single dose. 1
  • Second choice: Nitrofurantoin 100 mg twice daily for 5 days (if no contraindications). 1
  • Avoid cephalosporins in patients with documented penicillin allergy without formal allergy testing, despite lower cross-reactivity rates (2-4%) than historically believed. 3
  • Last resort: Fluoroquinolones for 3 days, recognizing their limitations and resistance promotion concerns. 1

Treatment Duration Specifics

  • Nitrofurantoin: 5-7 days required for optimal efficacy. 1
  • Trimethoprim-sulfamethoxazole: 3 days effective for women; 7 days needed for men. 1, 2
  • Fluoroquinolones: 3-day regimens are effective. 1
  • β-Lactams: 3-7 days required. 1

Critical Pitfalls to Avoid

  • Do not prescribe trimethoprim-sulfamethoxazole empirically when local resistance exceeds 20%, or in patients who have used it in the preceding 3-6 months, or who have traveled outside the United States recently. 2 These factors independently predict resistance. 2

  • Do not use fluoroquinolones as first-line therapy despite their excellent efficacy, as this promotes resistance to agents needed for serious infections. 1, 2

  • Do not prescribe longer durations than recommended. Each additional day beyond recommended duration carries a 5% increased risk for antibiotic-associated adverse events without additional benefits. 2

  • Do not use nitrofurantoin when eGFR <30 mL/min as this leads to treatment failure and increased toxicity. 3

  • Do not rely on hospital antibiograms for community-acquired cystitis, as they overestimate community resistance rates. 2 Local outpatient surveillance data is more accurate for guiding empiric therapy. 2

References

Guideline

Cystitis Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Uncomplicated Urinary Tract Infection Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Treatment of Cystitis in Patients with CKD and Allergies to PCN and Sulfa Antibiotics

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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