What are the differential diagnoses and evaluation approach for a patient with a colonic ulcer identified during colonoscopy?

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Differential Diagnoses and Evaluation of Colonic Ulcers

Primary Differential Diagnoses

When encountering a colonic ulcer on colonoscopy, obtain biopsies from at least two sites of the ulcer and surrounding tissue, and systematically exclude infectious causes before considering inflammatory bowel disease or other etiologies. 1

Major Diagnostic Categories

Inflammatory Bowel Disease (IBD)

  • Crohn's disease: Discrete ulcers with skip lesions, rectal sparing, longitudinal or aphthous ulcers, cobblestone appearance, anorectal lesions, and potential strictures of terminal ileum or ileocecal valve 1, 2
  • Ulcerative colitis: Continuous inflammation starting from rectum extending proximally, diffuse mucosal involvement, absence of skip lesions, rectal involvement in >97% of untreated cases 2
  • In 5-15% of cases, differentiation between Crohn's and UC is impossible, resulting in IBD-unclassified 2, 3

Infectious Colitis

  • Accounts for 38% of acute hemorrhagic colitis presentations 1
  • Stool cultures positive in only 40-60% of cases, making endoscopy essential 1
  • CMV colitis: Variable findings from patchy erythema and micro-erosions to deep ulcers and pseudotumors, particularly in immunocompromised patients 1
  • Intestinal tuberculosis: Localized involvement, patulous ileocecal valve, transverse ulcers, scars or pseudopolyps (88.9% positive predictive value for TB) 1

Ischemic Colitis

  • Normal rectum with sharply defined segments of involvement, particularly "watershed territories" (sigmoid to splenic flexure) 1, 4
  • Petechial hemorrhages, longitudinal ulcerations, rapid resolution on serial examinations 1
  • Colonoscopy establishes diagnosis in >90% of cases 1
  • Non-gangrenous form accounts for 80-85% of cases 4

NSAID-Induced Ulcers

  • Sharply demarcated ulcers with predilection for terminal ileum and proximal colon 1, 5
  • Diaphragm-like strictures are pathognomonic when present 1
  • Multiple strictures with normal intervening mucosa 1

Other Important Causes

  • Radiation colitis: Characteristic telangiectasias at colonoscopy 1
  • Solitary rectal ulcer syndrome (SRUS): Related to local tissue ischemia, often in elderly 6, 5
  • Stercoral ulceration: From fecal impaction, can cause perforation 6, 5
  • Medication-induced: Calcium polystyrene sulfonate with sorbitol can cause severe ulceration 7

Systematic Evaluation Approach

Immediate Endoscopic Assessment

Complete the colonoscopy with ileoscopy whenever possible, even if initial findings suggest a diagnosis, as disease extent and small bowel involvement critically alter management. 2, 3

  • Perform complete ileocolonoscopy to terminal ileum, not just sigmoidoscopy 2, 3
  • Document ulcer characteristics: location, depth, extent, distribution pattern (continuous vs. skip lesions) 2, 3
  • Assess for rectal involvement or sparing (rectal sparing strongly suggests Crohn's over UC) 2
  • Identify specific features: strictures, fistulae, perianal disease, cobblestoning 3

Biopsy Protocol

Obtain at least two biopsies from five different sites including the ulcer, surrounding tissue, uninflamed areas, terminal ileum, and rectum—even from normal-appearing mucosa. 1, 2, 3

  • Biopsies from unaffected areas document spared segments between inflammatory areas 2, 3
  • Histology distinguishes infectious colitis (preserved crypt architecture, acute inflammation) from IBD 1
  • Look for granulomas (specific for Crohn's), crypt abscesses (more common in UC at 41% vs. 19% in Crohn's), basal plasmacytosis (earliest UC feature) 1, 2

Mandatory Infectious Workup

Before finalizing any IBD diagnosis, obtain stool specimens for bacterial pathogens and C. difficile toxin testing, as negative cultures do not exclude infection. 1, 3

  • Stool cultures, ova and parasites, C. difficile toxin 3
  • Consider CMV testing (serology, tissue immunohistochemistry) if immunocompromised or severe colitis 1
  • Tuberculosis testing if epidemiologically relevant 1

Laboratory Assessment

Perform comprehensive baseline laboratory evaluation including CBC, CRP, albumin, liver function tests, iron studies, renal function, vitamin B12, and fecal calprotectin. 1, 3

  • Fecal calprotectin: 93% sensitivity, 96% specificity for IBD at threshold 100 μg/g 2, 3
  • Anemia workup: ferritin <30 μg/L indicates iron deficiency without inflammation; up to 100 μg/L may indicate deficiency with inflammation 1
  • CRP correlates with clinical severity in UC (except proctitis) 3

Cross-Sectional Imaging

Systematically perform MRI or CT enterography in all patients at diagnosis to evaluate small bowel involvement, transmural disease, strictures, fistulae, and extraluminal complications not visible endoscopically. 2, 3

  • MRI enterography preferred over CT due to lack of radiation and superior detection of active inflammation 3
  • Essential because one-third of Crohn's patients have small bowel involvement undetectable by colonoscopy 2
  • Abdominal CT or ultrasound can define disease extent and complications in acute presentations 1

Critical Diagnostic Pitfalls

In indeterminate cases after complete evaluation, consider capsule endoscopy of the small intestine, which establishes Crohn's diagnosis in 17-70% of IBD-unclassified patients by demonstrating small bowel lesions. 2, 3

  • A negative capsule endoscopy does not definitively exclude future Crohn's disease diagnosis 2, 3
  • Backwash ileitis (mild inflammation of terminal ileum without ulceration in 20% of UC pancolitis patients) can mimic Crohn's 1
  • Once IBD therapy starts, inflammation may appear segmental with rectal sparing, confounding diagnosis 1
  • NSAID use must be specifically queried and discontinued before attributing ulcers to other causes 1, 5
  • Colonoscopy itself rarely causes ischemic colitis; be aware of this iatrogenic possibility 8

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Diagnostic Approach for Crohn's Disease versus Ulcerative Colitis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Diagnostic Criteria for Crohn's Colitis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Ischaemic colitis--review.

Acta chirurgica Iugoslavica, 2008

Research

Isolated colonic ulcers: diagnosis and management.

Current gastroenterology reports, 2007

Research

Solitary rectal ulcer syndrome and stercoral ulcers.

Gastroenterology clinics of North America, 2009

Research

Colonoscopy induced ischemic colitis: An endoscopic and histological assay.

Clinics and research in hepatology and gastroenterology, 2022

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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