What is the safety of fluconazole (antifungal medication) use in pregnancy?

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Fluconazole Safety in Pregnancy

Fluconazole should be avoided during pregnancy, particularly in the first trimester, due to established risks of spontaneous abortion and congenital malformations; amphotericin B is the preferred systemic antifungal for pregnant women requiring treatment. 1, 2

Risk Profile by Trimester and Dose

First Trimester - Highest Risk Period

  • High-dose fluconazole (400-800 mg/day) causes a specific pattern of birth defects known as "fluconazole embryopathy," including craniosynostosis, characteristic facial features, digital synostosis, limb contractures, cleft palate, and skeletal abnormalities. 1, 2

  • Even low-dose fluconazole (≤150 mg) during early pregnancy is associated with increased risk of spontaneous abortion (adjusted OR 2.23,95% CI 1.96-2.54), with the risk increasing further for high doses (adjusted OR 3.20,95% CI 2.73-3.75). 3

  • Cardiac malformations are significantly increased with first-trimester exposure, particularly cardiac septal defects (OR 1.3,95% CI 1.1-1.67) and tetralogy of Fallot (OR 3.39,95% CI 1.71-6.74). 4, 5

  • The FDA specifically warns against long-term, high-dose fluconazole use during the first trimester based on case reports of at least 5 instances of congenital craniosynostosis and skeletal abnormalities. 6, 2

Second and Third Trimesters - Reduced but Present Risk

  • After the first trimester, fluconazole may be considered only when amphotericin B is not appropriate and the maternal condition requires systemic antifungal therapy for severe or life-threatening infections. 6, 1

  • The use during later trimesters must be judged against the need for continuous antifungal exposure, with benefits clearly outweighing potential risks. 6, 7

  • Pregnancy is a major risk factor for severe fungal infections, with highest risk in the third trimester and immediately postpartum, which complicates the risk-benefit calculation. 6

Preferred Treatment Alternatives

Systemic Infections Requiring Treatment

  • Amphotericin B (conventional or liposomal formulations) is the preferred systemic antifungal during pregnancy with FDA category B classification (no evidence of risk in humans). 6, 1, 2

  • Amphotericin B is well-distributed in umbilical cord serum, amniotic fluid, and placenta, with extensive clinical use documenting no teratogenicity or undue toxicity. 6

  • For disseminated or CNS fungal disease, use amphotericin B deoxycholate or liposomal amphotericin B, with or without flucytosine (category C, use with caution). 6

  • Intravenous amphotericin B at 0.3 mg/kg daily is the safest systemic option and should be administered throughout pregnancy for severe infections. 1

Localized Infections

  • For vaginal candidiasis, topical azoles (clotrimazole, miconazole) are the preferred first-line treatment throughout pregnancy and are safe and effective. 1, 7

  • For limited and stable pulmonary cryptococcosis or other non-severe fungal infections, defer antifungal therapy until after delivery with close monitoring during pregnancy. 6, 1

Critical Management Considerations

Contraception and Pregnancy Planning

  • Effective contraceptive measures should be recommended to all women of childbearing potential taking fluconazole 400-800 mg/day, continuing throughout treatment and for approximately 1 week (5-6 half-lives) after the final dose. 1, 2

If Pregnancy Occurs on Fluconazole

  • Substitution of amphotericin B for high-dose fluconazole in the first trimester is specifically recommended for invasive or refractory infections. 1

  • If fluconazole is used during pregnancy or the patient becomes pregnant while taking the drug, inform the patient of the potential hazard to the fetus. 2

Postpartum Considerations

  • A switch to fluconazole is appropriate after delivery for continued treatment. 6

  • Watch for immune reconstitution inflammatory syndrome (IRIS) in the postpartum period due to rapid reversal of pregnancy-related immunosuppression. 6, 1

  • Neonates born to women on chronic amphotericin B at delivery should be evaluated for renal dysfunction and hypokalemia. 1

Breastfeeding Safety

  • Breastfeeding while receiving fluconazole is safe, as fluconazole is the preferred azole antifungal for nursing mothers according to the American Academy of Pediatrics and IDSA. 1, 8

  • Fluconazole is present in breast milk at levels less than the neonatal dosage, and problems have not been observed in breastfed infants. 8

  • This breastfeeding safety applies even to high doses, as the amount excreted remains well below therapeutic infant doses. 8

Common Pitfalls to Avoid

  • Do not assume that the common single 150 mg dose for vaginal candidiasis is safe in early pregnancy—even this low dose is associated with increased spontaneous abortion risk. 3, 5

  • Do not confuse the pregnancy risks with breastfeeding safety—fluconazole is contraindicated in early pregnancy but safe during lactation. 1, 8

  • Do not overlook that pregnancy itself increases severity of certain fungal infections (particularly coccidioidomycosis and cryptococcosis), requiring careful risk-benefit assessment. 6

References

Guideline

Safety of Fluconazole During Pregnancy

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Associations between low- and high-dose oral fluconazole and pregnancy outcomes: 3 nested case-control studies.

CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne, 2019

Research

The safety of oral fluconazole during the first trimester of pregnancy: a systematic review and meta-analysis.

BJOG : an international journal of obstetrics and gynaecology, 2019

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Antifungal and Antibiotic Use in Pregnancy

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Fluconazole Safety During Breastfeeding

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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