What is the diagnosis and treatment for a patient with dysuria and burning sensation during ejaculation?

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Dysuria with Burning During Ejaculation: Diagnosis and Treatment

The most likely diagnosis is urethritis caused by Chlamydia trachomatis or Neisseria gonorrhoeae, and you should treat empirically with ceftriaxone 1000 mg IM/IV plus doxycycline 100 mg twice daily for 7 days while awaiting confirmatory testing. 1

Diagnostic Approach

Essential History and Physical Examination

  • Document the character and timing of symptoms: burning specifically during ejaculation points to urethral inflammation, while dysuria alone suggests broader urinary tract involvement 1, 2
  • Assess for urethral discharge: mucoid or purulent discharge is present in many cases of urethritis, though asymptomatic infections are common 1
  • Sexual history is critical: recent unprotected sexual contact, number of partners, and partner symptoms help identify sexually transmitted infection risk 1
  • Age matters for pathogen prediction: in men under 35 years, C. trachomatis predominates; in men over 35 years, coliform bacteria are more common 3

Required Laboratory Testing

  • Urinalysis and urine culture to document pyuria (≥5 polymorphonuclear leukocytes per oil immersion field on urethral swab) and rule out bacterial cystitis 1
  • Nucleic acid amplification test (NAAT) for N. gonorrhoeae and C. trachomatis using first-void urine or urethral swab—this is the gold standard for diagnosis 1, 2
  • If initial testing is negative but symptoms persist, test for Mycoplasma genitalium, which causes 20-40% of nongonococcal urethritis cases 1, 2
  • Gram stain of urethral discharge can provide immediate information: intracellular gram-negative diplococci confirm gonorrhea 1

Treatment Algorithm

Empiric Treatment (Before Test Results)

When diagnostic tools are unavailable or while awaiting results, treat for both gonorrhea and chlamydia 1:

  • Ceftriaxone 1000 mg IM or IV (single dose) 1
  • PLUS doxycycline 100 mg orally twice daily for 7 days 1

This dual therapy is essential because co-infection rates are high and undertreating gonorrhea risks antibiotic resistance 1.

Targeted Treatment (After Test Results)

  • If C. trachomatis confirmed: doxycycline 100 mg twice daily for 7 days (or azithromycin 1 g single dose if compliance is a concern) 1
  • If N. gonorrhoeae confirmed: ceftriaxone 1000 mg IM/IV plus doxycycline to cover potential chlamydial co-infection 1
  • If both tests negative but symptoms persist: consider empiric treatment for Mycoplasma genitalium or Ureaplasma urealyticum 1, 2

Partner Management

  • All sexual partners within the past 60 days must be treated with the same regimen, even if asymptomatic 1
  • Advise strict pelvic rest (no sexual activity) until both patient and partners complete treatment and symptoms resolve 1

Critical Pitfalls to Avoid

Do Not Miss Complicated Urethritis

  • Severe infection with systemic symptoms (fever, chills, malaise) may require parenteral therapy with IV ceftriaxone 1
  • Persistent symptoms after appropriate treatment warrant re-evaluation for treatment failure, reinfection, or alternative diagnoses like chronic prostatitis 1

Distinguish from Chronic Prostatitis/Chronic Pelvic Pain Syndrome

  • Men with pain in the perineum, suprapubic region, or tip of penis exacerbated by ejaculation may have chronic prostatitis (NIH Type III) rather than simple urethritis 1
  • The Meares-Stamey 4-glass test can differentiate chronic bacterial prostatitis from urethritis in refractory cases 1
  • Treatment overlap exists: some men with chronic prostatitis respond to urethritis-directed therapy, so empiric treatment for STIs is reasonable before pursuing prostatitis-specific management 1

Do Not Overlook Non-Infectious Causes

  • Interstitial cystitis/bladder pain syndrome presents with dysuria and pelvic pain but requires ≥6 weeks of symptoms and negative urine cultures 1
  • Trauma or chemical irritation from lubricants, spermicides, or vigorous sexual activity can mimic infectious urethritis 2, 4

Follow-Up Requirements

  • Test-of-cure is not routinely needed for uncomplicated chlamydial or gonococcal urethritis if symptoms resolve 1
  • Re-test in 3 months to detect reinfection, which is common due to untreated partners 1
  • If symptoms persist beyond 7 days of appropriate treatment, perform repeat NAAT and consider M. genitalium testing or referral for cystoscopy to rule out structural abnormalities 1, 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Dysuria: Evaluation and Differential Diagnosis in Adults.

American family physician, 2025

Research

Evaluation of dysuria in men.

American family physician, 1999

Research

Evaluation of dysuria in adults.

American family physician, 2002

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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