What is the appropriate diagnosis and treatment for a patient suspected of having encephalitis possibly linked to a rodent-borne illness?

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Rodent-Borne Encephalitis: Diagnosis and Treatment

For suspected rodent-borne encephalitis, immediately initiate empiric IV aciclovir 10 mg/kg three times daily within 6 hours of admission while pursuing diagnostic workup including detailed exposure history, lumbar puncture with CSF PCR, and MRI brain imaging. 1

Immediate Management

Empiric Antiviral Therapy

  • Start IV aciclovir (10 mg/kg three times daily) immediately if CSF/imaging suggests viral encephalitis, or within 6 hours of admission if results are unavailable or the patient is deteriorating 2, 1, 3
  • Continue aciclovir even if initial CSF microscopy or imaging is normal but clinical suspicion persists 1, 3
  • Reduce dose in pre-existing renal failure to prevent crystalluria and obstructive nephropathy 1, 3

Hospitalization and Monitoring

  • Admit immediately to a setting with access to intensive care, neurology services, or intermediate care units 1
  • Patients with decreased consciousness require urgent ICU evaluation for airway protection, ventilatory support, and management of increased intracranial pressure 1, 4

Diagnostic Workup

Critical Exposure History

When evaluating for rodent-borne encephalitis, specifically inquire about:

  • Direct contact with rodents (pet squirrels, wild rodents, laboratory animals) 2
  • Travel to endemic areas for Lassa fever (West Africa) or other rodent-borne viruses 2
  • Occupational exposures to rodents or their excreta 2

Laboratory Investigations

  • Lumbar puncture should be performed as soon as possible unless contraindicated by signs of increased intracranial pressure 2, 1
  • CSF analysis must include: cell count, protein, glucose, PCR for HSV/VZV, and bacterial/fungal cultures 2
  • CSF PCR results should be available within 24-48 hours 1
  • Blood cultures to identify bacterial and fungal etiologies 2
  • For rodent-borne pathogens specifically: serum microbiological cultures, serology, and PCR 2

Neuroimaging

  • MRI is preferred over CT for detecting early changes in viral encephalitis 2, 1
  • CT should only be used if MRI is unavailable or impractical 2
  • Perform imaging before lumbar puncture only if there are signs of increased intracranial pressure (focal neurological deficits, papilledema, Glasgow Coma Score <9-12) 2

EEG Monitoring

  • Perform EEG if non-convulsive or subtle motor seizures are suspected 2
  • EEG helps distinguish organic encephalitis from primary psychiatric disease 2

Specific Rodent-Borne Pathogens

Variegated Squirrel Bornavirus 1 (VSBV1)

  • Emerging pathogen identified in patients with fatal encephalitis who had contact with pet squirrels 2
  • Diagnosis established through metagenomic analysis, RT-PCR, and serology 2
  • Rodents represent 40% of all mammals and account for 1,700 species, making them significant reservoirs for emerging pathogens 2
  • No specific treatment available; management is supportive 2

Lassa Fever Virus

  • Consider in patients returning from West Africa with rodent exposure 2
  • Encephalitis is an uncommon presentation; more typical is hemorrhagic fever 2
  • MRI may show hypersignals with normal CSF characteristics 2
  • Diagnosis confirmed by genome amplification on serum 2
  • Standard protection measures are adequate for healthcare workers; no secondary transmission occurred in a documented case despite 118 contacts 2

Duration of Treatment

  • Continue IV aciclovir for 14-21 days for confirmed HSV encephalitis 3
  • Perform repeat lumbar puncture at completion to confirm CSF is HSV PCR-negative 3
  • If CSF remains positive, continue aciclovir with weekly PCR monitoring until negative 3

Multidisciplinary Approach

Management requires involvement of:

  • Neurology, infectious disease specialists, virology, microbiology 1
  • Neurophysiology, neuroradiology, neurosurgery 1
  • Intensive care staff 1
  • Transfer to specialized neurology service within 24 hours if diagnosis is not rapidly established or patient fails to improve 1, 3

Brain Biopsy Considerations

  • Brain biopsy has no role in initial assessment 2, 1
  • Consider stereotactic biopsy after the first week if no diagnosis is established, especially with focal imaging abnormalities 2, 1
  • An alternative diagnosis was made by biopsy in 20% of patients with suspected HSV encephalitis, half of which were treatable 2

Discharge and Follow-up

  • Do not discharge without a definitive or suspected diagnosis 1
  • All patients require rehabilitation assessment regardless of age 1, 4
  • Arrange outpatient follow-up with plans for ongoing therapy and rehabilitation 1, 4
  • Sequelae including anxiety, depression, and obsessive behaviors often become apparent after discharge 1

Key Pitfalls to Avoid

  • Never delay aciclovir while awaiting diagnostic results – HSV is the most treatable cause and delays beyond 48 hours worsen outcomes 3
  • Do not perform unselected CT scanning before lumbar puncture in all patients, as this causes unnecessary delays (median 18.5 vs 6 hours) 2
  • Do not assume negative initial imaging excludes encephalitis – MRI may initially be normal or remain normal during illness 2
  • Consider emerging rodent-borne pathogens in patients with unexplained encephalitis and rodent exposure, as these may present as sentinel cases of novel infections 2

References

Guideline

Encephalitis Management Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment of Viral Brainstem Encephalitis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Treatment Protocol for Wernicke's Encephalopathy

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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