What is the recommended treatment for a patient with Candida glabrata in their urine?

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Treatment of Candida glabrata in Urine

For symptomatic C. glabrata cystitis, use amphotericin B deoxycholate 0.3–0.6 mg/kg daily for 1–7 days OR oral flucytosine 25 mg/kg four times daily for 7–10 days, as C. glabrata is frequently fluconazole-resistant. 1

Initial Assessment: Determine if Treatment is Needed

Most patients with C. glabrata in urine do not require antifungal therapy. The critical first step is determining whether the patient falls into a high-risk category requiring treatment 2:

Asymptomatic patients who DO require treatment:

  • Neutropenic patients (treat as candidemia) 1, 2
  • Very low-birth-weight infants (<1500g) 1, 2
  • Patients undergoing urologic procedures within several days 1, 2

Asymptomatic patients who do NOT require treatment:

  • Otherwise healthy individuals with candiduria should only be observed 1, 3
  • Removing the urinary catheter alone clears candiduria in approximately 50% of asymptomatic patients 4

Treatment Algorithm for Symptomatic Infections

For Cystitis (Lower Urinary Tract)

First-line therapy for fluconazole-resistant C. glabrata:

  • Amphotericin B deoxycholate 0.3–0.6 mg/kg IV daily for 1–7 days 1, 2
  • OR oral flucytosine 25 mg/kg four times daily for 7–10 days 1, 2

Critical adjunctive measure:

  • Remove indwelling urinary catheter if present (this is a strong recommendation and essential for treatment success) 1, 2

Alternative consideration:

  • Amphotericin B deoxycholate bladder irrigation (50 mg/L sterile water daily for 5 days) may be useful for fluconazole-resistant C. glabrata cystitis, though this is a weak recommendation 1

For Pyelonephritis (Upper Urinary Tract)

For fluconazole-resistant C. glabrata pyelonephritis:

  • Amphotericin B deoxycholate 0.5–0.7 mg/kg IV daily for 2 weeks 1
  • May add flucytosine 25 mg/kg four times daily (combination therapy) 1
  • OR flucytosine monotherapy 25 mg/kg four times daily for 2 weeks (weak recommendation, consider only when amphotericin cannot be used) 1

Essential interventions:

  • Eliminate urinary tract obstruction if present 1
  • Consider removal or replacement of nephrostomy tubes or stents if feasible 1

Why C. glabrata Requires Different Treatment

C. glabrata represents approximately 20% of urinary Candida isolates in adults and has intrinsic or acquired fluconazole resistance in many cases 2, 3. This makes fluconazole—the standard first-line agent for most Candida urinary infections—inappropriate for C. glabrata 2.

Critical Pitfalls to Avoid

Do NOT use echinocandins for C. glabrata urinary tract infections:

  • Echinocandins (caspofungin, micafungin, anidulafungin) achieve minimal urinary concentrations and have documented therapeutic failures 2
  • Despite one case report of successful micafungin use 5, current guidelines do not support this approach due to inadequate urinary drug levels 2
  • The combination of caspofungin plus flucytosine should be avoided due to rapid development of flucytosine resistance 6

Do NOT use other azoles:

  • Voriconazole, posaconazole, and itraconazole achieve minimal urinary concentrations and are ineffective for lower urinary tract infections 3, 4

Flucytosine monotherapy limitations:

  • While flucytosine has good activity against C. glabrata, monotherapy is limited by toxicity and rapid resistance development 1, 2
  • Use with caution and monitor for adverse effects 1

Pre-Procedure Prophylaxis

For patients with C. glabrata candiduria undergoing urologic procedures:

  • Fluconazole 400 mg (6 mg/kg) daily OR amphotericin B deoxycholate 0.3–0.6 mg/kg daily for several days before and after the procedure 1

Treatment Duration

Continue therapy until symptoms resolve and urine cultures are negative for Candida species 1:

  • Cystitis: 7–14 days (depending on agent used) 1
  • Pyelonephritis: 2 weeks 1

Special Considerations

For suspected disseminated candidiasis with candiduria:

  • Treat as candidemia with systemic echinocandin therapy, not as isolated urinary infection 1

For fungus balls:

  • Surgical intervention is strongly recommended 1
  • Add systemic antifungal therapy as described for cystitis or pyelonephritis 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment of Candida glabrata in Urine

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Candida urinary tract infections in adults.

World journal of urology, 2020

Research

Candida urinary tract infections: treatment options.

Expert review of anti-infective therapy, 2007

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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