What confirms a positive Clostridioides difficile (Cdiff) infection in a patient?

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Last updated: January 17, 2026View editorial policy

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Confirming a Positive C. difficile Infection

A positive C. difficile infection is confirmed by demonstrating the presence of C. difficile toxins in stool from a symptomatic patient with diarrhea (≥3 unformed stools in 24 hours), using either a two-step algorithm (GDH screening followed by toxin testing, or NAAT followed by toxin confirmation) or NAAT alone in appropriate clinical contexts. 1

Essential Clinical Prerequisites for Testing

Before any laboratory testing, the patient must meet specific clinical criteria:

  • Diarrhea must be present: defined as ≥3 unformed stools in 24 hours with no obvious alternative explanation 2, 3
  • Only test unformed stool specimens: testing formed stool results in false positives and unnecessary antibiotic therapy 2, 3
  • Never test asymptomatic patients: this leads to detection of colonization rather than active infection 1, 4

Recommended Diagnostic Algorithms

Two-Step Algorithm (Preferred by Most Guidelines)

The most widely recommended approach uses a two-step testing strategy to balance sensitivity and specificity: 1

  1. First step - GDH screening: GDH enzyme immunoassay detects the presence of C. difficile but cannot distinguish between toxigenic and non-toxigenic strains 1

    • If GDH negative: C. difficile infection ruled out
    • If GDH positive: proceed to second step
  2. Second step - Toxin detection: Toxin A/B enzyme immunoassay confirms toxin production 1

    • If toxin positive: confirms active C. difficile infection
    • If toxin negative but GDH positive: may use NAAT as arbitration test 1

NAAT-Based Testing

Nucleic acid amplification tests (NAATs) offer excellent sensitivity (80-100%) and specificity (87-99%) but have important limitations: 1

  • NAAT alone: detects toxin genes but cannot distinguish between colonization and active infection, potentially leading to overdiagnosis 1
  • NAAT plus toxin confirmation: increasingly recommended to reduce false positives from colonization 1
  • Clinical context is critical: NAAT results must be interpreted with recent antibiotic exposure, hospitalization history, fever, abdominal pain, and leukocytosis 2, 3

Performance Characteristics of Individual Tests

Toxin A/B EIA (Not Recommended Alone)

  • Sensitivity: 32-98% (too variable and often low) 1
  • Specificity: 84-100% 1
  • Major limitation: insufficient sensitivity when used as standalone test 1, 3

GDH Screening

  • Cannot confirm infection alone: only indicates presence of organism, not toxin production 1
  • Requires confirmatory testing: approximately 20% of C. difficile strains are non-toxigenic 1

Cell Cytotoxicity Assay (Historical Gold Standard)

  • Detects toxin B in stool: historically considered reference standard 5, 6
  • Limitations: slow turnaround time, requires specialized laboratory facilities 1, 5
  • Rarely used clinically: replaced by faster methods in most laboratories 1

Toxigenic Culture (Research Gold Standard)

  • Most sensitive method: detects toxin-producing C. difficile 1, 5
  • Major drawback: cannot distinguish colonization from active infection, as 7% of asymptomatic hospitalized patients are colonized 1
  • Primary use: epidemiological typing and strain characterization 1

Critical Pitfalls to Avoid

Testing errors that lead to misdiagnosis:

  • Never repeat testing after initial negative result unless clinical presentation changes significantly (new character of diarrhea or new supporting evidence) 1
  • Do not test patients on laxatives within 24-48 hours 3
  • Avoid testing asymptomatic patients post-treatment: test of cure is not recommended 4
  • Do not rely on single toxin EIA alone: sensitivity is inadequate 1, 3

Special Testing Circumstances

For patients with ileus unable to produce stool:

  • Perirectal swabs are acceptable: demonstrate 95.7% sensitivity, 100% specificity when tested by PCR 2
  • Use same algorithms as stool: apply multistep testing protocols to perirectal swab specimens 2

Adjunctive Diagnostic Methods

CT imaging has limited diagnostic utility:

  • Sensitivity only 52%: inadequate for screening purposes 1
  • Specificity 93%: may help in severe-complicated cases 1
  • Typical findings: colonic wall thickening >4mm, "accordion sign," peri-colonic stranding 1
  • Best use: assessing severity in clinically suspected severe-complicated colitis, not for initial diagnosis 1

Endoscopy:

  • Sensitivity 51-55%: insensitive for C. difficile infection diagnosis 4
  • Specific finding: pseudomembranes confirm pseudomembranous colitis 4
  • Primary indication: when immediate results needed or to evaluate for underlying inflammatory bowel disease 7

Likelihood Ratios for Clinical Decision-Making

NAAT-based testing provides high diagnostic confidence:

  • Positive likelihood ratio: 46 (person with organism is 46 times more likely to test positive) 1
  • Negative likelihood ratio: 0.05 (person with organism is 20 times less likely to test negative) 1
  • Both ratios meet "high information value" thresholds (LR+ >10, LR- <0.1) 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

C. difficile Diagnostic Testing

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Diagnosis and Management of C. difficile Infection in Primary Care

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Clostridium difficile-associated diarrhea and colitis.

Infection control and hospital epidemiology, 1995

Research

Clinical recognition and diagnosis of Clostridium difficile infection.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2008

Guideline

Differential Diagnoses for Chronic Large Bowel Diarrhea with Positive C. difficile GDH and Toxin

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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