What are the potential side effects of the Japanese encephalitis (JE) vaccine?

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Last updated: January 18, 2026View editorial policy

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Japanese Encephalitis Vaccine Side Effects

Most Common Reactions Are Mild and Self-Limited

The Japanese encephalitis vaccine (JE-VC) is generally well-tolerated with predominantly mild local and systemic reactions, occurring in approximately half of vaccinees, while serious adverse events are rare at approximately 1% of recipients. 1, 2

Local Reactions

In adults:

  • Pain at injection site occurs in 28% after first dose and 18% after second dose 2
  • Tenderness affects 29% after first dose and 23% after second dose 2
  • Redness, swelling, and severe injection-site reactions each occur in ≤1% of recipients 1

In children:

  • Redness is most common in children aged 2 months to <3 years 1, 2
  • Pain and tenderness predominate in children aged 3-17 years 1, 2
  • Injection-site tenderness occurred in 50% of children receiving the 0.5-mL dose 1

Systemic Reactions

In adults:

  • Headache is most frequent: 22% after first dose, 13% after second dose 1, 2
  • Myalgia occurs in 13% after first dose, 6% after second dose 1, 2
  • Influenza-like illness and fatigue each affect 13% 1, 2

In children:

  • Fever (≥100.4°F) develops in 9% within 7 days after first dose and 6% after second dose 1
  • Fever rates are higher in children aged <3 years compared to older children 1
  • Muscle pain occurs in 31% of children receiving the 0.5-mL dose 1

Serious Adverse Events Are Uncommon

Serious adverse events occur in approximately 1% of JE-VC recipients, with no serious neurologic events identified in the pivotal safety study of nearly 2,000 adults. 1, 2

Documented Serious Events in Clinical Trials

  • Among 1,411 children, 23 (2%) reported serious adverse events within 7 months, most commonly pneumonia (n=6) and febrile seizures (n=5) 1
  • Only 3 serious adverse events occurred within 2 weeks of vaccination: one febrile convulsion, one cellulitis, and one gastroenteritis 1
  • One death from disseminated intravascular coagulation after suspected bacterial meningitis occurred 4 months post-vaccination and was deemed unrelated by investigators 1

Postlicensure Surveillance Data

No patterns of serious hypersensitivity, neurologic, or other serious adverse events considered vaccine-related were identified in U.S. surveillance covering >1 million doses distributed during 2009-2016. 1, 2

  • Overall adverse event rate was 14.8-15.2 per 100,000 doses distributed 1
  • This extensive surveillance provides reassurance about the safety profile in real-world use 1, 2

Allergic Reactions: Modern vs. Older Vaccines

Current Vero Cell-Derived Vaccine (JE-VC)

No serious allergic reactions occurred in any study group during prelicensure trials comparing JE-VC to placebo or older mouse brain-derived vaccine. 1, 2

  • Only 2 cases of urticaria occurred among 2,650 participants in the pivotal safety study 1
  • One case was generalized urticaria occurring 8 days post-vaccination, treated with cetirizine and resolved in 3 days 1
  • Angioedema was not observed in clinical trials 1

Older Mouse Brain-Derived Vaccine (JE-MB)

The older mouse brain-derived vaccine had significantly higher rates of serious hypersensitivity reactions, estimated at 10-260 cases per 100,000 vaccinees. 1

  • Reactions included generalized urticaria, angioedema of extremities/face/oropharynx, with accompanying bronchospasm and respiratory distress in some cases 1
  • Most reactions occurred within 24-48 hours after first dose, but delayed onset (median 3 days, range 1-14 days) occurred after subsequent doses 1
  • Persons with history of anaphylaxis or allergies were 2-11 times more likely to develop hypersensitivity reactions 1
  • Gelatin stabilizer was implicated in some allergic reactions 1

Neurologic Safety Profile

The current JE-VC vaccine has an excellent neurologic safety profile with no serious neurologic events identified in clinical trials. 1, 2

Current Vaccine Safety

  • Among JE-VC recipients, <1% had neurologic adverse events including febrile seizures (n=3), drooling (n=1), and dizziness (n=1), with rates similar to comparison vaccines 1
  • No serious neurologic events were identified in the pivotal safety study 1

Historical Concerns with Mouse Brain-Derived Vaccine

  • The older JE-MB vaccine raised concerns due to mouse brain substrate potentially containing myelin basic protein 1
  • Moderate to severe neurologic symptoms (encephalitis, seizures, gait disturbances, parkinsonism) were reported at 0.1-2 cases per 100,000 vaccinees 1
  • Cases of acute disseminated encephalomyelitis (ADEM) temporally associated with JE-MB led Japan to suspend routine vaccination in 2005 1
  • WHO determined no evidence existed of increased ADEM risk and no causal link was demonstrated 1

Booster Dose Tolerability

Booster doses are well-tolerated with similar or lower reaction rates than primary series, and no serious adverse events were reported within 28 days of booster administration. 1, 2

Adults

  • Tenderness in 19% and pain in 13% were most frequent local reactions 1
  • Headache (11%) and fatigue (10%) were most common systemic reactions 1
  • No serious adverse events occurred within 28 days 1

Children

  • 8% had local adverse events and 14% had systemic adverse events within 7 days 1
  • Two serious adverse events occurred within 1 month: one lumbar abscess and one dengue fever (4 weeks post-vaccination) 1

Concomitant Vaccination Considerations

With Hepatitis A Vaccine

Co-administration with hepatitis A vaccine increases reports of pain, redness, and swelling at injection site compared to either vaccine alone. 1, 2

  • No other differences in safety or reactogenicity were observed 1
  • Immunogenicity remained adequate for both vaccines 1

With Rabies Vaccine

Co-administration with rabies vaccine results in higher rates of both local (75% vs 63%) and systemic (60% vs 54%) reactions compared to JE-VC alone. 1, 2

Critical Clinical Pitfalls to Avoid

Patients should not be withheld from receiving a second dose due to mild reactions after the first dose. 2

  • Solicited adverse events are more frequent after dose 1 than dose 2 in both adults and children 1
  • In children aged 2-11 months, 46% reported events after dose 1 versus 28% after dose 2 1
  • In children aged 1-17 years, 32% reported events after dose 1 versus 18% after dose 2 1

Monitor for delayed hypersensitivity reactions, particularly after subsequent doses. 2

  • While most reactions with older vaccines occurred within 24-48 hours after first dose, delayed onset (up to 14 days) occurred after subsequent doses 1
  • This pattern is less relevant with modern JE-VC but awareness remains important 2

Persons with history of severe allergies require counseling but are not absolutely contraindicated from vaccination with modern JE-VC. 1

  • The older JE-MB vaccine showed 2-11 times higher risk in allergic individuals 1
  • Modern JE-VC has not demonstrated this pattern in clinical trials 1, 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Side Effects of Japanese Encephalitis Vaccination

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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