What are the potential side effects of Japanese Encephalitis (JE) vaccination?

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Last updated: January 15, 2026View editorial policy

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Side Effects of Japanese Encephalitis Vaccination

Japanese encephalitis vaccination is generally well-tolerated with predominantly mild local and systemic reactions, and serious adverse events are rare, occurring in approximately 1% of vaccinees. 1

Common Local Reactions

In adults, the most frequent local reactions after JE-VC (Vero cell-derived vaccine) are: 1

  • Pain at injection site: 28% after first dose, 18% after second dose
  • Tenderness: 29% after first dose, 23% after second dose
  • Severe local reactions occur in only 3% of recipients 1

In children, local reactions vary by age: 1

  • Ages 2 months to <3 years: Redness is most common
  • Ages 3-17 years: Pain and tenderness predominate
  • Ages 2 months-17 years: Injection-site tenderness in 50% receiving 0.5-mL dose 1

Common Systemic Reactions

In adults, the most frequent systemic reactions include: 1

  • Headache: 22% after first dose, 13% after second dose
  • Myalgia: 13% after first dose, 6% after second dose
  • Influenza-like illness: 13%
  • Fatigue: 13%

In children, the most commonly reported systemic reaction is: 1

  • Fever (most frequent across all pediatric age groups)
  • Muscle pain in 31% of children receiving 0.5-mL dose 1

Important Pattern: Reactions Decrease After Second Dose

Systemic adverse events are reported by a lower percentage of participants after the second dose compared with the first dose, which is reassuring for vaccine completion. 1

Serious Adverse Events

Serious adverse events are uncommon, occurring in approximately 1% of JE-VC recipients in pooled analyses of over 3,558 vaccinees. 1

No serious neurologic events were identified in the pivotal safety study of nearly 2,000 adults. 1

Serious allergic reactions did not occur in any study group during prelicensure trials comparing JE-VC to placebo or older mouse brain-derived vaccine. 1

Allergic/Hypersensitivity Reactions

Urticaria and angioedema represent the most concerning allergic pattern, though rare with modern JE-VC: 1

  • In pivotal trials, only 2 cases of urticaria occurred among 2,650 participants
  • One case of generalized urticaria occurred 8 days after second JE-VC dose, was moderate in severity, resolved in 3 days with antihistamine treatment, and angioedema was not observed 1

Historical context with older mouse brain-derived vaccine (JE-MB): 1

  • Since 1989, a pattern of hypersensitivity reactions (urticaria and/or angioedema) was reported primarily in travelers from Australia, Europe, and North America
  • Reactions occurred after a median of 12 hours following first dose (88% within 3 days)
  • After second dose, reactions had longer median interval of 3 days
  • Past history of urticaria was associated with increased risk (relative risk 9.1) 1

The modern JE-VC vaccine has a significantly better safety profile than the older mouse brain-derived vaccine, with severe local reactions occurring in only 3% versus 6% with JE-MB. 1

Neurological Concerns

No serious neurologic events were identified in the pivotal JE-VC safety study. 1

Historical surveillance data from older vaccines in Japan (1965-1973) disclosed neurologic events (encephalitis, encephalopathy, seizures, peripheral neuropathy) at rates of 1 to 2.3 per million vaccinees, though causality was never established. 1

With modern JE-VC, postlicensure surveillance covering >1 million doses distributed in the U.S. (2009-2016) showed: 1

  • Overall adverse event rate: 14.8-15.2 per 100,000 doses
  • Serious adverse event rate: 1.1-1.8 per 100,000 doses
  • No patterns of serious hypersensitivity, neurologic, or other serious adverse events considered vaccine-related were identified 1

Booster Dose Safety

Booster doses are well-tolerated with similar or lower reaction rates: 1

In adults receiving booster at 15 months: 1

  • Tenderness: 19%
  • Pain: 13%
  • Headache: 11%
  • Fatigue: 10%
  • No serious adverse events reported within 28 days

In children receiving booster: 1

  • Local adverse events: 8%
  • Systemic adverse events: 14%

Concomitant Vaccination Considerations

Co-administration with hepatitis A vaccine: 1

  • Increased reports of pain, redness, and swelling at injection site
  • No other safety differences compared to either vaccine alone

Co-administration with rabies vaccine: 1

  • Higher rates of both local (75%) and systemic (60%) reactions when given together
  • Compared to 63% local and 54% systemic when JE-VC given alone

Key Clinical Pitfalls to Avoid

  1. Do not withhold second dose due to mild reactions after first dose - reactions typically decrease with subsequent doses 1

  2. Monitor for delayed hypersensitivity reactions - while rare with JE-VC, reactions can occur up to 2 weeks after vaccination, particularly after second dose 1

  3. Consider patient history of urticaria - historically associated with increased reaction risk, though data primarily from older vaccine formulations 1

  4. Reassure patients about neurological safety - modern JE-VC has excellent neurological safety profile with no identified patterns of serious neurologic events in over 1 million distributed doses 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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