Antibiotics for Gastroenteritis
Most cases of acute gastroenteritis do not require antibiotics, as the majority are viral and self-limited; however, specific bacterial pathogens in high-risk patients warrant targeted antimicrobial therapy. 1, 2
When Antibiotics Are NOT Indicated
Routine empiric antibiotic therapy for bloody or watery diarrhea is not recommended in immunocompetent patients while awaiting diagnostic results. 1
- The cornerstone of management remains oral rehydration therapy, not antimicrobials, since viral agents predominate as the causative pathogens 2
- Antimotility agents and empiric antibiotics should be avoided in most presentations 1
Specific Indications for Empiric Antibiotic Treatment
Empiric antibiotics should be initiated in the following high-risk scenarios before culture results are available:
Bloody Diarrhea (Dysentery)
- Infants <3 months of age with suspected bacterial etiology 1
- Ill patients with documented fever (in medical setting), abdominal pain, bloody diarrhea, and bacillary dysentery syndrome (frequent scant bloody stools, fever, cramps, tenesmus) presumptively due to Shigella 1
- Recent international travelers with body temperature ≥38.5°C and/or signs of sepsis 1
- Immunocompromised patients with severe illness and bloody diarrhea 1
Empiric Antibiotic Choices by Age
Adults:
- Fluoroquinolone (ciprofloxacin 500 mg PO twice daily) OR azithromycin 500 mg daily, depending on local susceptibility patterns and travel history 1
Children:
- Third-generation cephalosporin (ceftriaxone) for infants <3 months or those with neurologic involvement 1
- Azithromycin for older children, depending on local susceptibility and travel history 1, 2
Pathogen-Specific Antibiotic Recommendations
Once a specific pathogen is identified, treatment should be modified or discontinued accordingly 1:
Shigella Species
- First-line: Azithromycin 500 mg daily for 3 days (adults); pediatric dosing per weight 1, 2, 3
- Alternative: Ciprofloxacin (if susceptible) or ceftriaxone 1
- Critical caveat: Avoid fluoroquinolones if ciprofloxacin MIC ≥0.12 μg/mL, even if reported as "susceptible" 1
- Treatment is indicated for clinical improvement and to reduce transmission 1, 2
Campylobacter jejuni
- First-line: Azithromycin 500 mg daily for 3 days 1, 2
- Alternative: Fluoroquinolone (ciprofloxacin) only if susceptible—note high resistance rates of 19% 1
- Treatment primarily indicated for severe or prolonged symptoms; most cases are self-limited 2, 3
Nontyphoidal Salmonella Species
- Usually NOT indicated for uncomplicated infection in immunocompetent patients 1
- Treatment warranted for high-risk groups: 1
- Neonates up to 3 months old
- Adults >50 years with suspected atherosclerosis
- Immunosuppressed patients
- Patients with cardiac valvular/endovascular disease
- Patients with significant joint disease
- Antibiotic choices (if susceptible): Ceftriaxone, ciprofloxacin, TMP-SMX, or amoxicillin 1, 2
- Severe cases requiring treatment: Ceftriaxone 2g IV daily is preferred 1, 2
Salmonella typhi or Paratyphi (Enteric Fever)
- First-line: Ceftriaxone 2g IV daily OR ciprofloxacin 500 mg twice daily 1
- Alternatives: Ampicillin, TMP-SMX, or azithromycin (depending on susceptibility) 1
- Patients with sepsis features should receive empiric broad-spectrum therapy after obtaining blood, stool, and urine cultures 1
Vibrio cholerae
- First-line: Doxycycline 300 mg single dose or 100 mg twice daily for 3 days 1
- Alternatives: Ciprofloxacin, azithromycin, or ceftriaxone 1
Yersinia enterocolitica
- First-line: TMP-SMX 1
- Alternatives: Cefotaxime or ciprofloxacin 1
- For bacteremia: Ceftriaxone 2g IV daily plus gentamicin 5 mg/kg IV daily 1
Clostridium difficile
- First-line: Oral vancomycin 125 mg four times daily 1
- Alternative: Fidaxomicin (not for children <18 years) 1
- Metronidazole acceptable for nonsevere CDI in children and as second-line in adults 1
Critical Contraindication: STEC/EHEC
Antibiotics should be AVOIDED in Shiga toxin-producing E. coli (STEC) O157 and other STEC producing Shiga toxin 2 due to increased risk of hemolytic uremic syndrome 1. This is a strong recommendation with moderate-quality evidence.
Special Populations Requiring Consideration
Immunocompromised Patients
- Lower threshold for empiric antibiotic treatment with severe illness and bloody diarrhea 1
- Consider broader coverage and longer treatment durations 1
Elderly Patients
- Increased risk for invasive Salmonella infection if >50 years with atherosclerosis 1
- May require treatment even for nontyphoidal Salmonella 1
Healthcare Workers and Food Handlers
- Asymptomatic carriers in high-risk occupations should be treated according to local public health guidance 1
- Exception: Asymptomatic Salmonella typhi carriers may be treated empirically to reduce transmission 1
Duration and Monitoring
- Reassess clinical status if no improvement after initial therapy; consider noninfectious etiologies (lactose intolerance, IBD, IBS) for symptoms lasting ≥14 days 1
- Modify or discontinue antibiotics when a clinically plausible organism is identified and susceptibility results are available 1
- Avoid prolonged courses unless specifically indicated for invasive disease 1
Common Pitfalls to Avoid
- Do not use antimotility agents (loperamide) in children <18 years or in any patient with inflammatory diarrhea, fever, or suspected toxic megacolon 1
- Do not prescribe fluoroquinolones empirically for Shigella in areas with known resistance or if MIC data suggests resistance 1
- Do not treat asymptomatic contacts of patients with bloody diarrhea; focus on infection control measures instead 1
- Do not give antibiotics for STEC O157 or Shiga toxin 2-producing strains 1