What is the specific test to detect T cell immunodeficiency in pediatric patients?

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Last updated: February 5, 2026View editorial policy

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Specific Test to Detect T Cell Immunodeficiency in Children

T-cell proliferation assays measuring mitogen and antigen responses are the hallmark functional test for detecting T-cell immunodeficiency in children, while flow cytometry enumeration of lymphocyte subsets (particularly naive T cells expressing CD45RA) provides essential quantitative assessment. 1

Primary Screening Tests

Complete Blood Count with Differential

  • Absolute lymphocyte count is the best initial laboratory test when suspecting primary immunodeficiency 2
  • Lymphopenia (defined as <4,500/mm³ in children under 8 months or <1,500/mm³ in older children) suggests T-cell disorder 3, 4
  • A complete blood count usually reveals leukopenia, lymphopenia, or both in patients with severe combined immunodeficiency (SCID) 1

Flow Cytometry for Lymphocyte Subset Enumeration

  • Lymphocyte subset analysis by flow cytometry (CD3+, CD4+, CD8+, CD19+, CD16/56+) is essential for quantifying specific immune cell populations 3
  • CD4 T-cells are identified as CD3+ and CD4+ positive 1
  • CD8 T-cells are identified as CD3+ and CD8+ positive 1
  • Naive T-cell counts (expressing CD45RA and lacking CCR7) are usually very low or absent in SCID 1
  • Flow cytometry characterizing naive T lymphocytes (CD45RA+CD27+) or recent thymic emigrants (CD45RA+CD31+) is recommended when primary immunodeficiency is suspected 3

Definitive Functional Tests

T-Cell Proliferation Assays

  • Defects in T-cell proliferative responses to mitogens and antigens in vitro are the hallmark immunologic abnormalities in combined immunodeficiency 1
  • These assays exhibit profoundly reduced proliferation to mitogens and antigens in SCID patients 1
  • This functional assessment is more specific than cell counts alone for detecting T-cell dysfunction 1

T-Cell Receptor Excision Circle (TREC) Assay

  • TREC quantification by real-time quantitative PCR (values <20 copies/mL indicate absent thymic output) is recommended when primary immunodeficiency is suspected 3
  • The TREC assay can diagnose T-cell deficiencies at birth using dried blood spots from newborn screening cards 1, 5
  • Low TREC numbers are indicative of T-cell primary immunodeficiencies 1
  • Infants with SCID (classical or leaky) will have very low or absent TRECs 1
  • This test has made universal newborn screening for SCID possible as a public health measure 5

Algorithmic Approach to Testing

Initial Evaluation

  1. Complete blood count with differential - identifies lymphopenia 2, 4
  2. Lymphocyte subset enumeration by flow cytometry - quantifies T-cell populations 3
  3. Immunoglobulin levels (IgG, IgA, IgM) - hypogammaglobulinemia results from lack of T-cell help 1

Confirmatory Testing When Initial Tests Abnormal

  1. T-cell proliferation assays with mitogens and antigens - the gold standard functional test 1
  2. TREC quantification - assesses thymic output 3
  3. Naive T-cell phenotyping (CD45RA+CD27+) - distinguishes recent thymic emigrants 1, 3

Advanced Diagnostic Testing

  • Genetic testing with next-generation sequencing for molecularly undefined cases 3
  • Maternal engraftment testing if T cells are present (determines if T cells are of maternal origin) 1

Critical Clinical Caveats

Age-Specific Considerations

  • IgG levels can be low or normal in infants because of transplacental transfer of maternal IgG, making immunoglobulin levels less reliable initially 1
  • Prematurity (gestational age <37 weeks) and/or low birth weight (<2,500g) can cause transient lymphopenia 3, 6
  • Premature infants have lower TREC numbers at birth, which usually increase over time 1

Common Pitfalls to Avoid

  • Normal white blood cell counts do not rule out serious infections in immunocompromised patients 7
  • Some forms of SCID (such as CD3δ or coronin 1A deficiencies) might show normal thymus on chest imaging 1
  • In some SCID forms (e.g., ADA deficiency), T cells can be present at birth but disappear later, potentially missed by TREC screening 1
  • Serious infection or metabolic stress in an infant without immunodeficiency can cause the thymus to shrink dramatically 1

Urgent Management Considerations

  • Only irradiated, CMV-negative, lymphocyte-depleted cellular blood products should be administered to patients with suspected cellular immunodeficiency to prevent graft-versus-host disease 1
  • Live vaccines should not be administered to patients with severely impaired specific immunity 1
  • HIV testing is mandatory in all cases of unexplained lymphopenia 3

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Interpretation of lymphocyte subset counts by the general pediatrician.

Pediatrics international : official journal of the Japan Pediatric Society, 2019

Guideline

Lymphopenia Diagnosis and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Immunocompromised State Identification through Complete Blood Count

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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