In a young adult male with dysuria and purulent urethral discharge and a Gram stain showing gram‑negative intracellular diplococci, what is the most likely causative organism?

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Gonorrhea (Neisseria gonorrhoeae)

The causative organism is Neisseria gonorrhoeae—the finding of gram-negative intracellular diplococci on Gram stain of urethral discharge in a symptomatic male is diagnostic for gonococcal urethritis with >99% specificity and >95% sensitivity. 1

Why This is Gonorrhea

  • The Centers for Disease Control and Prevention defines gonorrhea by the observation of gram-negative intracellular diplococci in a urethral smear obtained from a male as a laboratory criterion for diagnosis 2
  • This Gram stain finding in symptomatic men with urethral discharge is diagnostic for gonorrhea without requiring culture confirmation 1
  • The probability of gonorrhea in men with urethral discharge whose smears contain intracellular gram-negative diplococci is 94.8% 3

Why Not the Other Organisms

  • Chlamydia trachomatis: Cannot be visualized on Gram stain—it is an obligate intracellular bacterium that requires nucleic acid amplification tests or culture for diagnosis 1
  • Mycoplasma genitalium: Lacks a cell wall and cannot be seen on Gram stain; requires specialized molecular testing 1
  • Ureaplasma urealyticum: Also lacks a cell wall and is not visible on Gram stain; requires specialized culture or molecular methods 1

Critical Diagnostic Pitfall to Avoid

  • Neisseria meningitidis can also appear as gram-negative intracellular diplococci on urethral Gram stain and has been associated with urethritis in men who receive oral sex, as it colonizes the nasopharynx 4
  • However, N. gonorrhoeae remains by far the most common cause of this clinical presentation, and empiric treatment should target gonorrhea 2, 1
  • Branhamella (Moraxella) catarrhalis can rarely cause urethritis with similar Gram stain appearance, but this is exceedingly uncommon 5

Immediate Next Steps

  • Treat empirically for both gonorrhea AND chlamydia immediately, as coinfection is common and dual therapy is recommended 1, 6
  • Send nucleic acid amplification tests for both N. gonorrhoeae and C. trachomatis on first-void urine or urethral swab for confirmation 1, 6
  • Perform comprehensive STI screening including syphilis serology and HIV testing 1
  • Instruct the patient to refer sex partners from the preceding 60 days for evaluation and presumptive treatment 1

References

Guideline

Diagnostic Approach to Urethritis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Non-Sexually Transmitted Causes of Urethritis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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