What is the drug of choice for an uncomplicated urinary tract infection caused by Escherichia coli in a patient with normal renal function (estimated glomerular filtration rate ≥ 60 mL/min)?

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Last updated: February 9, 2026View editorial policy

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Drug of Choice for E. coli UTI

Nitrofurantoin 100 mg orally twice daily for 5 days is the preferred first-line treatment for uncomplicated E. coli urinary tract infections in adults with normal renal function. 1

Primary Recommendation: Nitrofurantoin

Nitrofurantoin should be your default choice for uncomplicated cystitis caused by E. coli in patients with eGFR ≥60 mL/min. 1 This recommendation is based on:

  • Exceptional susceptibility rates: 95.6% of E. coli isolates remain susceptible to nitrofurantoin despite over 60 years of clinical use 1, 2
  • Minimal resistance development: Only 2.3% resistance rate, compared to 24% for fluoroquinolones and 29% for trimethoprim-sulfamethoxazole 2
  • High cure rates: Achieves 88-93% clinical cure and 81-92% bacteriological eradication 3
  • Antimicrobial stewardship: Classified as WHO "Access" antibiotic, preserving broader-spectrum agents 3

Alternative First-Line Option: Fosfomycin

Fosfomycin trometamol 3 g as a single oral dose is an equally acceptable alternative, particularly convenient for women. 1, 4 The FDA label specifically indicates fosfomycin for uncomplicated UTI caused by susceptible E. coli strains. 4

When Trimethoprim-Sulfamethoxazole May Be Used

Trimethoprim-sulfamethoxazole 160/800 mg twice daily for 3 days can only be considered if: 1

  • Local E. coli resistance rates are documented to be <20% 1
  • The patient has not used it in the previous 3 months 3

Critical caveat: Community resistance rates now approach 29%, which directly correlates with clinical treatment failure. 1 The 2011 IDSA/ESMID guidelines downgraded this agent from first-line status due to these resistance concerns. 1

Agents to Avoid for Empiric E. coli UTI

  • Amoxicillin/ampicillin alone: Very high worldwide resistance rates in E. coli make these unsuitable for empiric therapy 1
  • Fluoroquinolones (ciprofloxacin, levofloxacin): Should be reserved for pyelonephritis or complicated infections, not simple cystitis, due to 24% resistance rates and stewardship concerns 3, 2

Critical Contraindications to Nitrofurantoin

Do not use nitrofurantoin if: 1, 3

  • eGFR <60 mL/min: Insufficient urinary drug concentrations and increased risk of peripheral neuropathy
  • Suspected pyelonephritis: Poor renal tissue penetration makes it ineffective for upper tract infections
  • Last trimester of pregnancy: Contraindicated in final 3 months

Clinical Decision Algorithm

For lower tract symptoms only (dysuria, frequency, urgency without fever or flank pain):

  • → Prescribe nitrofurantoin 100 mg twice daily for 5 days 1, 3
  • → Alternative: fosfomycin 3 g single dose 1

For upper tract suspicion (fever, flank pain, costovertebral angle tenderness):

  • Do NOT use nitrofurantoin 3
  • → Use fluoroquinolone (ciprofloxacin 500-750 mg twice daily for 7 days OR levofloxacin 750 mg daily for 5 days) if local resistance permits 5
  • → Alternative: oral cephalosporin (cefpodoxime 200 mg twice daily for 10 days) 5

Follow-Up Recommendations

  • Routine post-treatment cultures are NOT indicated in asymptomatic patients 1, 3
  • If symptoms persist or recur within 2 weeks: 1
    • Obtain urine culture with susceptibility testing
    • Assume possible resistance to initial agent
    • Re-treat with different appropriate agent for full 7-day course

Common Pitfalls to Avoid

  • Using nitrofurantoin for "borderline" upper tract infections (mild flank pain or low-grade fever) is ineffective because it does not reach therapeutic concentrations in renal tissue 3
  • Empiric ciprofloxacin for simple cystitis contributes to rising resistance and should be avoided unless resistance data specifically support its use 3
  • Prescribing TMP-SMX without knowing local resistance rates leads to unacceptably high treatment failure when resistance exceeds 20% 1, 3

References

Guideline

First‑Line Management of Uncomplicated E. coli Urinary Tract Infection in Adults

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Nitrofurantoin Dosing for Uncomplicated UTI

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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