In a 31‑year‑old woman who completed a 7‑ to 10‑day course of cephalexin (Keflex) for acute uncomplicated cystitis with a prior positive Escherichia coli urine culture and now presents with recurrent dysuria, urinary frequency, and suprapubic pain, which laboratory tests and antibiotic regimen should be ordered?

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Recurrent UTI After Cephalexin: Laboratory Testing and Antibiotic Selection

Immediate Laboratory Testing Required

Order a urine culture with antimicrobial susceptibility testing immediately before starting any antibiotics. 1 This is critical because her symptoms are recurring after completing cephalexin, suggesting either treatment failure due to resistant E. coli or reinfection with a different organism. 1

  • Do not treat empirically without culture in this scenario – the European Association of Urology guidelines specifically recommend urine culture when "symptoms do not resolve or recur within 4 weeks after completion of treatment." 1
  • A urinalysis (dipstick) can be performed concurrently but adds minimal diagnostic value when symptoms are classic for cystitis. 1
  • Do not order imaging or cystoscopy – extensive workup is not indicated in women under 40 without risk factors for complicated UTI. 1

Antibiotic Selection: First-Line Empiric Therapy

Start nitrofurantoin 100 mg twice daily for 5 days as empiric therapy while awaiting culture results. 1, 2 This is the optimal choice for several reasons:

Why Nitrofurantoin is Preferred Over Repeating Cephalexin:

  • Cephalexin has inferior efficacy compared to other UTI antimicrobials and should be used with caution for uncomplicated cystitis. 1 The fact that her symptoms recurred after cephalexin suggests either inadequate treatment or resistant organism.
  • β-lactams like cephalexin are considered alternative rather than first-line agents by IDSA guidelines. 1
  • Nitrofurantoin maintains 96% susceptibility against E. coli in recent studies, compared to only 59% for trimethoprim-sulfamethoxazole. 3
  • Nitrofurantoin produces minimal collateral damage to normal flora, preserving broader-spectrum antibiotics for serious infections. 2

Alternative First-Line Options (in order of preference):

  1. Trimethoprim-sulfamethoxazole 160/800 mg twice daily for 3 days – only if local E. coli resistance rates are below 20% (check your institution's antibiogram). 1
  2. Fosfomycin trometamol 3 g single dose – appropriate choice with minimal resistance, though may have slightly inferior efficacy. 1

When to Avoid Nitrofurantoin:

  • Creatinine clearance <60 mL/min – nitrofurantoin does not achieve adequate concentrations in renal insufficiency. 2
  • Suspected pyelonephritis (fever, flank pain, systemic symptoms) – nitrofurantoin does not achieve adequate tissue concentrations for upper UTI. 2

Fluoroquinolones: Reserve as Last Resort

Do not use ciprofloxacin or levofloxacin empirically for uncomplicated cystitis. 1 While fluoroquinolones are highly efficacious in 3-day regimens, they should be reserved for:

  • Documented resistance to first-line agents based on culture results 2
  • Pyelonephritis (upper UTI) where tissue penetration is required 2
  • The FDA has issued warnings about serious adverse effects affecting tendons, muscles, joints, nerves, and CNS. 2

Clinical Decision Algorithm

Step 1: Obtain urine culture with susceptibilities before starting antibiotics 1

Step 2: Start empiric nitrofurantoin 100 mg twice daily for 5 days 1, 2

Step 3: Reassess in 48-72 hours:

  • If symptoms improve, complete the 5-day course 2
  • If no improvement or worsening, consider pyelonephritis and switch to fluoroquinolone (ciprofloxacin 500 mg twice daily for 7 days) 1

Step 4: When culture results return:

  • If organism is susceptible to nitrofurantoin, continue current therapy 1
  • If resistant, switch to an agent based on susceptibilities for a 7-day course (assuming the original organism was not eradicated) 1

Common Pitfalls to Avoid

  • Do not repeat cephalexin – her recurrence after completing this agent suggests it was inadequate. 1
  • Do not treat without culture – this is a treatment failure scenario requiring susceptibility data. 1
  • Do not use amoxicillin or ampicillin – very high worldwide resistance rates make these inappropriate for empiric therapy. 1
  • Do not order post-treatment cultures if asymptomatic – routine follow-up cultures are not indicated. 1

Duration of Therapy

  • Nitrofurantoin: 5 days 1, 2
  • If switching to alternative agent based on culture: 7 days (longer duration for presumed treatment failure) 1
  • Do not exceed 7 days for acute cystitis – this increases adverse effects without improving outcomes. 1, 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment of Uncomplicated Urinary Tract Infections with Nitrofurantoin

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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