What organisms most commonly cause food‑borne illness in children?

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Last updated: February 13, 2026View editorial policy

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Organisms Causing Food Poisoning in Children

Viral Pathogens Dominate Overall Burden

Norovirus is the leading cause of foodborne illness in children, accounting for 58% of all foodborne gastroenteritis cases and causing nearly 1 million ambulatory care visits and 14,000 hospitalizations annually in children under 5 years. 1, 2

  • Rotavirus historically caused 3 million annual episodes before vaccine introduction, with over 500,000 outpatient visits and 27,000 hospitalizations, but has declined significantly since vaccination programs began. 1, 2
  • Most viral gastroenteritis cases are self-limited and do not require laboratory testing in previously healthy, immunocompetent children. 2

Bacterial Pathogens Cause More Severe Disease

Among the five most common bacterial pathogens in children under 5 years, the distribution is as follows:

Salmonella enterica subspecies (42% of bacterial cases)

  • Salmonella is the leading cause of hospitalization (35%) and death (28%) among all foodborne bacterial pathogens in children. 1, 2
  • Most commonly linked to poultry products and produce contamination. 1, 3

Campylobacter (28% of bacterial cases)

  • Second most common bacterial pathogen after Salmonella. 1, 4
  • Frequently attributed to undercooked chicken products. 4, 3
  • Testing warranted when children present with bloody or mucoid stools, fever, and abdominal tenderness. 4

Shigella (21% of bacterial cases)

  • Causes dysentery with frequent scant stools containing blood and mucus. 1
  • More common in developing countries but remains significant in U.S. pediatric populations. 1

Yersinia enterocolitica (5% of bacterial cases)

  • Consider in school-aged children with right lower quadrant abdominal pain mimicking appendicitis, as this may represent mesenteric adenitis. 4
  • Higher risk in young African American and Asian children, diabetics, and those with chronic liver disease or iron-overload states. 4

E. coli O157 (3% of bacterial cases)

  • Causes severe diarrheal disease and hemolytic uremic syndrome (HUS), with 60% of patients developing these life-threatening complications. 1, 5
  • Predominantly affects young children with potentially fatal outcomes. 5

Additional High-Risk Pathogens from Specific Sources

Raw Milk-Associated Pathogens

Children should never consume raw milk due to severe, life-threatening bacterial infections. 5

  • Listeria monocytogenes causes invasive disease resulting in pneumonia, sepsis, or meningitis in two-thirds of infected neonates. 5
  • Brucella abortus causes brucellosis with prolonged fever and multi-organ involvement. 5
  • Mycobacterium tuberculosis transmission through raw milk caused hundreds of outbreaks before pasteurization became standard. 5
  • From 1998-2009, raw milk consumption resulted in 93 illness outbreaks, with 79% involving at least one person younger than 20 years. 5

Parasitic Pathogens

  • Giardia and Cryptosporidium are detected in 0.77-3% and 3.07% of cases, respectively. 2
  • These parasites cause prolonged diarrheal illness requiring specific diagnostic testing with fluorescence and EIA methods. 1, 2

Critical Clinical Decision Points

When to Test

Laboratory investigation is warranted when: 1

  • Bloody or mucoid stools suggest bacterial pathogens
  • Fever with abdominal tenderness is present
  • Immunocompromised status exists
  • Outbreak situation is suspected
  • Symptoms persist beyond 7 days

Common Pitfall to Avoid

Do not routinely test for parasites or perform stool cultures in previously healthy children with acute watery diarrhea lasting less than 7 days, as most cases are viral and self-limited. 1, 2 Reserve testing for the specific clinical scenarios listed above to avoid unnecessary healthcare costs and antibiotic overuse.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Infective Etiologies of Acute Diarrhea in Children

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Campylobacter and Yersinia enterocolitica Infections in Pediatric Patients

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Raw Milk Consumption Risks in Children

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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