What is the recommended first‑line treatment and management for Candida auris infection, including dosing, duration, source control, and infection‑control measures?

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Last updated: February 15, 2026View editorial policy

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Candida auris: First-Line Treatment and Management

Echinocandins (caspofungin, micafungin, or anidulafungin) are the mandatory first-line therapy for all confirmed or suspected Candida auris infections, with fluconazole absolutely contraindicated due to >90% resistance rates. 1, 2, 3

Antifungal Therapy

First-Line Treatment (Strong Recommendation)

  • Echinocandins are the drugs of choice with the following dosing regimens: 1, 2, 3
    • Caspofungin: 70 mg loading dose, then 50 mg daily (90% susceptibility) 1, 2
    • Micafungin: 100 mg daily (98.2% susceptibility) 1, 2
    • Anidulafungin: 200 mg loading dose, then 100 mg daily (97.2% susceptibility) 1, 2

Why Echinocandins Are Non-Negotiable

The susceptibility data makes this choice clear-cut: echinocandins maintain 90-98% activity against C. auris, while fluconazole shows only 10.7% susceptibility. 1, 2 This is fundamentally different from other Candida species where fluconazole remains a viable option for non-critically ill patients. 4

Second-Line Options (Only When Echinocandins Fail)

  • Liposomal amphotericin B (3-5 mg/kg daily) or amphotericin B deoxycholate (0.5-1.0 mg/kg daily) may be considered for persistent candidemia or clinical unresponsiveness to echinocandins. 1, 2, 3
  • Critical caveat: Only 43% of C. auris isolates are susceptible to amphotericin B, making this a suboptimal alternative that requires documented susceptibility testing before use. 1, 2, 3

Contraindicated Agents

  • Fluconazole and itraconazole are absolutely contraindicated for C. auris due to >90% resistance rates. 1, 2, 3, 5
  • This represents a major departure from standard candidemia management where fluconazole is acceptable for non-critically ill patients. 4

Treatment Duration

  • Minimum 14 days after documented bloodstream clearance and resolution of clinical symptoms. 1, 2
  • Obtain daily blood cultures until clearance is documented. 1
  • Perform dilated funduscopic examination to rule out metastatic endophthalmitis. 4

Source Control

Central Venous Catheter Management

  • Remove CVCs as early as safely possible when the catheter is the presumed source. 4, 1
  • This recommendation is consistent with standard candidemia management but is particularly critical given C. auris's ability to form persistent biofilms on devices. 5, 6

Environmental Persistence

C. auris survives on inanimate surfaces for extended periods and forms "dry" biofilms that resist standard cleaning. 6 This makes source control more challenging than with other Candida species.

Infection Control Measures (Critical for Outbreak Prevention)

Patient Isolation and Screening

  • Implement strict contact precautions for all confirmed or suspected C. auris cases with dedicated equipment. 1
  • Screen high-risk patients and close contacts using composite swabs of axilla and groin. 1
  • Patients require 3 consecutive negative screens at least 24 hours apart before being considered negative. 1
  • Risk factors include prolonged ICU stay (>15-20 days), multiple antibiotics, invasive devices, and close contact with colonized patients. 7, 8, 9

Environmental Decontamination

  • Use sporicidal disinfectants only: hydrogen peroxide, peracetic acid-based, or chlorine-based products. 1
  • Quaternary ammonium compounds are ineffective against Candida species and should not be used. 1
  • Standard hospital disinfectants commonly fail against C. auris, contributing to healthcare outbreaks. 5, 6

Laboratory Identification

  • MALDI-TOF or molecular methods (PCR of ITS/D1-D2 regions) are required for accurate identification. 5
  • Conventional biochemical tests frequently misidentify C. auris as C. haemulonii, C. famata, C. sake, or Saccharomyces cerevisiae. 7, 8
  • Perform antifungal susceptibility testing on all isolates to confirm resistance patterns and guide therapy. 1, 3

Clinical Context and Mortality

C. auris carries mortality rates up to 64%, classifying it as an urgent public health threat. 1, 2, 3 The combination of multidrug resistance, environmental persistence, and person-to-person transmission in healthcare settings distinguishes it from other Candida species. 8, 6 Critically ill patients with multiple comorbidities in ICU settings are at highest risk. 7, 9, 6

Common Pitfalls to Avoid

  • Never use fluconazole empirically when C. auris is suspected, even in non-critically ill patients—this contradicts standard candidemia guidelines but is essential for C. auris. 2, 3
  • Do not rely on standard biochemical identification—demand molecular or MALDI-TOF confirmation. 5, 8
  • Do not use standard hospital disinfectants—they are inadequate for C. auris environmental control. 1, 5
  • Do not assume amphotericin B will work—57% of isolates are resistant, requiring susceptibility testing. 1, 2

References

Guideline

Treatment of Candida auris Infections

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Treatment Recommendations for *Candida auris* Infection

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Management of *Candida auris* Candidemia

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Candida auris: the new fungal threat.

Le infezioni in medicina, 2023

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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