What are the procedures and considerations involved in performing a bone marrow transplant, including patient evaluation, donor selection, conditioning regimen, stem cell collection, infusion, engraftment monitoring, infection prophylaxis, immunosuppression, and long‑term follow‑up?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: February 18, 2026View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Bone Marrow Transplant: Comprehensive Procedural Overview

Bone marrow transplantation (also called hematopoietic cell transplantation or HCT) involves infusing hematopoietic progenitor cells into patients to re-establish normal blood cell production and immune function, typically after high-dose chemotherapy or radiation has destroyed the patient's existing bone marrow. 1

Patient Evaluation and Selection

Initial assessment must determine transplant eligibility based on disease type, disease stage, patient age, performance status, and comorbidities. 1

  • The HCT Comorbidity Index (HCT-CI) predicts non-relapse mortality and overall survival, helping identify suitable candidates. 1
  • Patients must undergo comprehensive evaluation including complete blood count, bone marrow biopsy with cytogenetics, organ function testing (cardiac, pulmonary, hepatic, renal), and infectious disease screening. 1
  • For allogeneic transplant, HLA typing of the patient and potential donors must be completed early in the disease course. 1

Donor Selection and Hierarchy

The donor selection follows a strict priority order: HLA-identical siblings first, then matched unrelated donors (if search time is under 3 months), followed by haploidentical or cord blood donors. 1

  • Younger donors are preferred over older HLA-identical siblings when matched unrelated donors are available, as younger donor age correlates with better disease-free survival. 1
  • Cytomegalovirus serostatus of donors should be considered when balancing non-relapse mortality versus relapse risk. 1
  • For matched sibling and unrelated donor transplants, peripheral blood is the recommended stem cell source due to faster engraftment, reduced graft failure, and lower transplant-related mortality compared to bone marrow. 1
  • Bone marrow grafts remain indicated for specific conditions like severe aplastic anemia. 1, 2

Stem Cell Collection

Peripheral blood stem cells are mobilized using granulocyte-colony stimulating factor (G-CSF) and collected via apheresis, targeting approximately 3 × 10⁸ nucleated cells per kilogram for bone marrow or higher CD34+ cell doses for peripheral blood. 1, 3

  • For autologous transplant, cells are harvested from the patient before conditioning and cryopreserved. 1
  • For allogeneic transplant, donor cells are typically collected fresh on the day of infusion or shortly before. 3

Conditioning Regimen

Conditioning chemotherapy and/or radiation is administered before stem cell infusion to eradicate malignant cells and create immunosuppression for donor cell engraftment. 1

Myeloablative Conditioning (MAC)

  • Recommended for fit patients aged ≤55 years with HCT-CI score <2. 1
  • Common regimens include fludarabine/busulfan (Flu/Bu4), which has less toxicity than busulfan/cyclophosphamide (Bu/Cy). 1
  • Total body irradiation (TBI)-based regimens should be considered for patients with CNS disease or myeloid sarcoma. 1

Reduced Intensity Conditioning (RIC)

  • Indicated for patients >55 years or those with significant comorbidities (HCT-CI ≥2). 1
  • RIC regimens rely more heavily on graft-versus-leukemia effect rather than direct cytotoxic tumor eradication. 1
  • For patients with chronic myelomonocytic leukemia, myeloablative conditioning should be preferred when patients are fit enough, as relapse rates approach 27-52% with reduced intensity approaches. 1

Critical Timing Consideration

  • All infectious complications from prior chemotherapy must be under adequate control before proceeding with conditioning. 1

Stem Cell Infusion

The actual transplant involves intravenous infusion of collected stem cells, similar to a blood transfusion, typically occurring 1-2 days after completion of conditioning. 1, 3

  • The infusion itself is relatively straightforward and takes 15 minutes to several hours depending on cell volume. 3
  • Patients may experience minor reactions including fever, chills, or allergic symptoms during infusion. 3

Engraftment Monitoring

Engraftment—when donor cells begin producing new blood cells—typically occurs 14-21 days post-infusion. 3

  • Daily monitoring includes complete blood counts to track absolute neutrophil count (ANC) recovery, with engraftment defined as ANC >500/μL for three consecutive days. 3
  • Platelet recovery typically lags behind neutrophil recovery by several days to weeks. 3
  • Chimerism testing (analyzing the proportion of donor versus recipient cells) is performed at regular intervals to confirm donor cell engraftment and detect early relapse. 1

Infection Prophylaxis

Comprehensive antimicrobial prophylaxis is mandatory during the neutropenic period and beyond due to profound immunosuppression. 1

  • Antibacterial prophylaxis with fluoroquinolones is standard during neutropenia. 1
  • Antifungal prophylaxis with azoles (fluconazole or broader-spectrum agents like voriconazole or posaconazole) prevents invasive fungal infections. 1
  • Antiviral prophylaxis with acyclovir or valacyclovir prevents herpes simplex and varicella-zoster reactivation. 1
  • Pneumocystis jirovecii prophylaxis with trimethoprim-sulfamethoxazole is required for at least 6 months post-transplant, longer if chronic GVHD develops. 1
  • Cytomegalovirus monitoring with preemptive therapy (letermovir prophylaxis or weekly PCR monitoring with treatment if positive) is essential for at-risk patients. 1

Immunosuppression for GVHD Prevention

For allogeneic transplant, immunosuppressive medications prevent graft-versus-host disease, where donor immune cells attack recipient tissues. 1

  • Standard GVHD prophylaxis combines a calcineurin inhibitor (cyclosporine or tacrolimus) with methotrexate or mycophenolate mofetil. 1, 3
  • Post-transplant cyclophosphamide is increasingly used for haploidentical transplants and shows comparable outcomes to traditional prophylaxis. 1
  • Immunosuppression is typically tapered starting 3-6 months post-transplant if no GVHD develops. 3

Acute GVHD Management

  • Acute GVHD (occurring within 100 days) affects skin, liver, and gastrointestinal tract and is treated with high-dose corticosteroids as first-line therapy. 3
  • Steroid-refractory GVHD requires second-line agents including antithymocyte globulin or newer targeted therapies. 3

Chronic GVHD Management

  • Chronic GVHD (occurring after 100 days) can affect multiple organ systems and requires prolonged immunosuppression, often for years. 3

Supportive Care During Engraftment

Intensive supportive measures are critical during the 2-4 week neutropenic period. 1

  • Red blood cell transfusions maintain hemoglobin >7-8 g/dL. 1
  • Platelet transfusions maintain counts >10,000/μL (or >50,000/μL if bleeding or procedures planned). 1
  • Nutritional support via parenteral nutrition may be necessary due to severe mucositis. 3
  • Growth factors (G-CSF) may be used to accelerate neutrophil recovery, though their routine use remains controversial. 1

Long-Term Follow-Up

Lifelong monitoring is required due to risks of late complications including relapse, chronic GVHD, infections, organ dysfunction, secondary malignancies, and endocrine disorders. 4, 3

Relapse Surveillance

  • Regular bone marrow examinations and disease-specific monitoring (every 3 months initially, then less frequently) detect early relapse. 1
  • Minimal residual disease monitoring using flow cytometry or molecular techniques identifies impending relapse before morphologic recurrence. 1

Late Complications Screening

  • Annual screening includes pulmonary function tests (restrictive/obstructive lung disease), ophthalmologic exams (cataracts), endocrine evaluation (thyroid dysfunction, growth hormone deficiency, gonadal failure), and bone density assessment (osteoporosis). 4, 3
  • Lifelong cancer surveillance is mandatory due to 2-6 fold increased risk of secondary malignancies. 4

Immunization Schedule

  • Patients require re-immunization starting 6-12 months post-transplant, as transplant eliminates prior vaccine immunity. 1
  • Live vaccines are contraindicated until at least 24 months post-transplant and only if no active GVHD or immunosuppression. 1

Critical Pitfalls to Avoid

  • Never delay transplant evaluation in eligible patients—up to one-third of patients fail to reach transplant after the decision is made due to disease progression or complications. 1
  • Do not proceed with conditioning if active infections are not controlled—this dramatically increases transplant-related mortality. 1
  • Avoid using cord blood as first choice when other donor options exist—outcomes are generally inferior except in specific circumstances. 1
  • Never discontinue antimicrobial prophylaxis prematurely—infections remain the leading cause of non-relapse mortality. 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

First‑Line Allogeneic Transplantation for Severe Aplastic Anemia in Patients < 50 Years

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Research

Allogeneic bone marrow transplantation: procedures and complications.

American journal of hospital pharmacy, 1991

Related Questions

What are the management options for patients with bone marrow malignancies, specifically those with indolent or smoldering forms of the disease, such as smoldering multiple myeloma, low-risk myelodysplastic syndromes (MDS), chronic lymphocytic leukemia (CLL), or follicular lymphoma, who do not require recurrent blood transfusions, chemotherapy, targeted cancer therapies, bone marrow transplant, or haematopoietic stem cell transplant?
What are the treatment options for bone marrow related cancers, such as leukemia (e.g. Acute Myeloid Leukemia (AML) or Acute Lymphoblastic Leukemia (ALL)), lymphoma, and multiple myeloma?
What is the recommended infectious prophylaxis regimen for patients undergoing allogeneic (bone marrow from a donor) bone marrow transplantation?
What is involved in a bone marrow (hematopoietic stem cell) transplant for a patient with a hematological disorder, such as leukemia, lymphoma, or multiple myeloma, or an autoimmune disease?
How can giant cell arteritis be diagnosed without a temporal artery biopsy in a patient aged ≥50 years presenting with new-onset temporal headache, scalp tenderness, jaw claudication, visual disturbances, polymyalgia rheumatica‑type proximal muscle pain, and elevated erythrocyte sedimentation rate and C‑reactive protein?
Can whey protein supplements cause chronic kidney disease in healthy individuals or accelerate renal decline in patients with existing CKD or risk factors such as diabetes or hypertension?
Can a patient discontinue a statin (HMG‑CoA reductase inhibitor) if the lipid panel shows normal cholesterol?
How should I manage atopic dermatitis and the resulting post‑inflammatory scarring?
Should I adjust the management for a patient with hypertension, diabetes, heart failure, chronic kidney disease, and dementia?
What are the current recommendations for prescribing itopride to lactating women?

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.