What genes are associated with vitamin D deficiency?

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From the Guidelines

Genetic variants in the GC, CYP2R1, and DHCR7 genes are strongly associated with low vitamin D levels, and individuals with these variants may benefit from supplementation with vitamin D3 (cholecalciferol) to maintain optimal levels. Several genes are linked to low vitamin D levels, with the most significant being GC, CYP2R1, and DHCR7, which affect vitamin D binding, metabolism, and synthesis pathways 1. The GC gene encodes vitamin D binding protein, which transports vitamin D in the bloodstream. CYP2R1 is responsible for converting vitamin D to its active form in the liver. DHCR7 influences the availability of 7-dehydrocholesterol, the precursor molecule needed for vitamin D synthesis in the skin. People with certain variants of these genes may have lower vitamin D levels even with adequate sun exposure and dietary intake. Some key points to consider:

  • Genetic testing might be informative for individuals with a family history of vitamin D deficiency or those who struggle to maintain normal levels despite supplementation.
  • Supplementation with vitamin D3 (cholecalciferol) is typically recommended, with a daily dose of 1,000-2,000 IU for maintenance or higher doses if prescribed for deficiency.
  • Regular blood testing to monitor levels is recommended, aiming for a 25-hydroxyvitamin D level between 30-50 ng/mL, as levels below this range have been associated with increased risk of fractures, falls, functional limitations, and other adverse clinical outcomes 1.

From the Research

Genes Linked to Low Vitamin D

  • The genetic factors that influence vitamin D levels are not well understood, but studies have shown that circulating vitamin D concentrations are partially determined by genetic factors 2.
  • Genetic variants, such as mutations, deletions, amplifications, and inversions, in genes involved in the metabolism, catabolism, transport, or binding of vitamin D to its receptor, may affect vitamin D levels 2.
  • Epigenetic modifications, such as DNA methylation, have also been associated with vitamin D levels in several studies 2.
  • However, the underlying genetic determinants of plasma 25-hydroxyvitamin D3 [25(OH)D] concentrations remain to be elucidated 2.
  • There is a need for further research to understand the genetic and epigenetic factors that influence vitamin D status, as this could help to identify individuals who are at risk of vitamin D deficiency and develop targeted interventions 2.

Vitamin D Deficiency and Health Outcomes

  • Vitamin D deficiency has been linked to an increased risk of osteoporosis, cardiovascular disease, and some cancers 3, 4.
  • Low vitamin D levels have also been associated with increased risk of falls, fractures, and musculoskeletal decline 3, 4.
  • However, the evidence for the association between vitamin D levels and some health outcomes, such as fractures, is inconsistent 4.

Diagnosis and Treatment of Vitamin D Deficiency

  • Vitamin D deficiency can be diagnosed by measuring 25-hydroxyvitamin D serum concentrations 5, 3.
  • Treatment of vitamin D deficiency typically involves supplementation with vitamin D, either alone or in combination with calcium 3, 4.
  • However, the optimal dose and duration of vitamin D supplementation are not well established, and further research is needed to determine the most effective treatment strategies 3, 4.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Genetic and epigenetic factors influencing vitamin D status.

Journal of cellular physiology, 2018

Research

Effectiveness and safety of vitamin D in relation to bone health.

Evidence report/technology assessment, 2007

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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