Diagnostic Approach for Chlamydia Using DNA Probe Testing
Nucleic acid amplification tests (NAATs), including DNA probe testing, are the recommended diagnostic method for detecting Chlamydia trachomatis infections due to their superior sensitivity and specificity compared to other testing methods. 1
Diagnostic Test Selection
Preferred Testing Methods
- DNA probe tests detect Chlamydia trachomatis by using a chemiluminescent DNA probe that binds to specific sequences of C. trachomatis ribosomal RNA
- The test provides several advantages:
- High specificity for C. trachomatis (no cross-reactions with other organisms)
- Results available within 2-3 hours
- Can be performed on various specimen types 2
- While DNA probe tests are effective, newer nucleic acid amplification techniques generally offer higher sensitivity
Test Performance Comparison
- DNA probe sensitivity: 84-92% (depending on specimen type) 3
- PCR sensitivity: 85.6-88.6%
- LCR sensitivity: 96.5% (highest among available tests)
- EIA sensitivity: Only 38-65% (significantly lower) 3
Specimen Collection Guidelines
For Female Patients
- Endocervical specimens are preferred:
- Remove all secretions and discharge from the cervical os first
- Insert swab 1-2 cm into the endocervical canal (past the squamocolumnar junction)
- Rotate swab against wall of endocervical canal for 10-30 seconds
- Withdraw without touching vaginal surfaces 2
- Self-collected vaginal swabs are also acceptable for NAATs
- First-catch urine samples can be used with NAATs 1
For Male Patients
- Urethral specimens:
- Delay collection until 2 hours after patient has voided
- Insert swab 2-4 cm into the urethra
- Rotate for at least one revolution for 5 seconds 2
- First-catch urine samples are preferred when using NAATs 1
Verification of Positive Results
- Verification of positive results is particularly important in low-prevalence populations (< 5%)
- Options for verification include:
- Culture testing (highest specificity but requires viable organisms)
- Second NAAT that targets a different nucleic acid sequence
- Competitive probe assay that prevents attachment of the labeled probe 2
Treatment Approach
- Recommended treatment regimens:
- Azithromycin 1g orally in a single dose, OR
- Doxycycline 100mg orally twice daily for 7 days 4
- Treatment should be initiated promptly to prevent complications
- Partner notification and treatment are essential to prevent reinfection
Clinical Considerations
High-Risk Populations
- Regular screening is recommended for:
Common Pitfalls to Avoid
- Relying solely on symptoms - Most infections are asymptomatic
- Improper specimen collection - Ensure columnar epithelial cells are obtained, not just secretions
- Delaying treatment - Prompt treatment prevents serious complications including PID, infertility, and ectopic pregnancy
- Neglecting partner treatment - Essential to prevent reinfection 2, 4
Importance of Proper Diagnosis and Treatment
- Untreated Chlamydia infections can lead to:
- Pelvic inflammatory disease (20% of infected women)
- Chronic pelvic pain (4%)
- Infertility (3%)
- Adverse pregnancy outcomes (2%) 4
- Early detection through appropriate testing significantly reduces these complications
DNA probe testing represents an effective diagnostic tool for Chlamydia detection, though newer NAAT methods may offer superior sensitivity. Proper specimen collection and handling are crucial for accurate results, and verification of positive results should be considered in low-prevalence populations.