What antibiotics are used empirically in COVID-19 patients?

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Last updated: October 29, 2025View editorial policy

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Empirical Antibiotic Use in COVID-19 Patients

Antibiotics should NOT be routinely prescribed in COVID-19 patients unless there is clinical suspicion of bacterial co-infection, with specific exceptions for critically ill patients and those with clear signs of bacterial infection. 1

Assessment for Bacterial Co-infection

  • Bacterial co-infections are uncommon in COVID-19 patients, particularly at the time of admission, supporting a restrictive approach to antibiotic use 1

  • Clinical indicators that may warrant empirical antibiotics include:

    • Critically ill patients requiring ICU admission or mechanical ventilation 1, 2
    • Radiological findings compatible with bacterial pneumonia 1, 2
    • Elevated inflammatory markers (WBC count, CRP, procalcitonin >0.5 ng/mL) 1, 3
    • Immunocompromised status 1, 4
    • Patients with COVID-19 and shock 1
  • Before starting antibiotics, obtain appropriate cultures:

    • Sputum and blood cultures 1, 2
    • Pneumococcal urinary antigen testing 1, 2
    • Legionella urinary antigen testing (according to local guidelines) 1, 2

Antibiotic Selection Based on Illness Severity

For Non-Critically Ill Patients with Suspected Bacterial Co-infection:

  • Follow local/national guidelines for community-acquired pneumonia 1, 2
  • Recommended options include:
    • Beta-lactams such as amoxicillin or third-generation cephalosporins 2, 5
    • For atypical coverage, consider doxycycline rather than macrolides due to potential cardiac side effects 2, 5

For Critically Ill Patients with Suspected Bacterial Co-infection:

  • Consider empirical anti-MRSA antibiotics in selected patients 1, 2
  • For secondary bacterial infections, consider antipseudomonal coverage based on local epidemiology 1, 6
  • Common pathogens to cover include Streptococcus pneumoniae, Haemophilus influenzae, Staphylococcus aureus, and Pseudomonas aeruginosa 2, 5, 6

Duration and De-escalation

  • If cultures are negative and patient is improving, stop antibiotics after 48 hours 1, 4
  • For confirmed bacterial infections, a 5-7 day course is typically sufficient if the patient has reached clinical stability 1, 2
  • Consider using procalcitonin levels to guide early discontinuation of antibiotics 1, 3

Common Pitfalls to Avoid

  • Overuse of antibiotics in COVID-19 patients without evidence of bacterial co-infection increases antimicrobial resistance without improving outcomes 7, 8
  • Studies show that 58-78% of COVID-19 patients receive antibiotics despite bacterial co-infection being uncommon (5.5% at ICU admission) 7, 8
  • Serum biomarkers alone should not determine when to start antibiotics, especially in non-critically ill patients 1, 3
  • Not all radiographic abnormalities in COVID-19 patients indicate bacterial co-infection; they may be due to the viral infection alone 2, 9
  • Empirical use of broad-spectrum antibiotics like meropenem and fluoroquinolones has been associated with increased mortality in some studies 10, 9

Specific Antibiotic Considerations

  • Cephalosporins are among the most commonly prescribed antibiotics for COVID-19 patients 11, 8
  • Macrolides (particularly azithromycin) have shown some potential benefit in certain COVID-19 patients, though this remains controversial 9, 11
  • When covering for atypical pathogens, doxycycline may be preferred over macrolides in patients receiving other QT-prolonging medications 2, 5

By following these evidence-based guidelines, clinicians can make appropriate decisions about empirical antibiotic use in COVID-19 patients, balancing the need to treat potential bacterial co-infections while minimizing unnecessary antibiotic use that contributes to antimicrobial resistance.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Antibiotic Use in COVID-19 Patients with Suspected Bacterial Co-infection

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Diagnosing Bacterial Co-infection in COVID-19 Patients

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Empirical Antibiotic Therapy Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Bacterial infection, antibiotic use and COVID-19: Lessons from the intensive care unit.

South African medical journal = Suid-Afrikaanse tydskrif vir geneeskunde, 2021

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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