Why does bacterial resistance occur when antibiotics are used to treat COVID-19?

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Last updated: October 29, 2025View editorial policy

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Why Bacterial Resistance Occurs When Antibiotics Are Used in COVID-19

Bacterial resistance occurs with inappropriate antibiotic use in COVID-19 patients because the prevalence of bacterial co-infection is low (only 5.1% initially and 13.1% secondary), yet antibiotics are prescribed in over 70% of cases, creating selective pressure for resistant organisms without clinical justification. 1

Prevalence of Bacterial Infections in COVID-19

  • Bacterial co-infection upon initial presentation is rare in COVID-19 patients, with only 5.1% having bacterial co-infection at admission 1
  • Secondary bacterial infections during hospitalization occur in approximately 13.1% of COVID-19 patients 1
  • The overall incidence of respiratory tract infections and/or bloodstream infections in COVID-19 patients is only 8.8% 1
  • COVID-19 has a significantly lower rate of bacterial co-infection compared to influenza, where co-infection rates range from 11-35% 1

Inappropriate Antibiotic Use in COVID-19

  • Despite low bacterial infection rates, antibiotics are prescribed in over 70% of COVID-19 patients 1
  • This widespread use of antibiotics without clinical justification creates selective pressure for resistant organisms 1, 2
  • Indiscriminate use of antibiotics during the COVID-19 pandemic has led to concerns about increasing antimicrobial resistance 3, 4
  • The gratuitous use of antibiotics for COVID-19 treatment raises concerns about the emergence of antimicrobial resistance (AMR) 2

Mechanism of Resistance Development

  • Unnecessary antibiotic exposure allows naturally resistant bacteria to survive and multiply while susceptible bacteria are eliminated 1, 4
  • Prolonged hospitalization and respiratory support in COVID-19 patients increases the risk of acquiring resistant infections when antibiotics are used unnecessarily 1
  • Overuse of antibiotics may cause unnecessary adverse events, lengthen hospital stays, increase medical expenditure, and impact antimicrobial resistance 1
  • Multidrug-resistant pathogens are a significant concern in the COVID-19 era, particularly in patients requiring mechanical ventilation 1

Guidelines for Appropriate Antibiotic Use

  • Strong recommendation against routine prescription of antibiotics in COVID-19 patients 1
  • Antibiotics should only be prescribed based on clinical justifications such as disease manifestations, severity, imaging findings, and laboratory data 1, 3
  • A comprehensive microbiologic workup should be performed before administering empirical antibiotics 1
  • If antibiotics are started, they should be discontinued within 48 hours if cultures and urinary antigen tests show no signs of bacterial pathogens 1, 3

Risk Factors for Bacterial Infections in COVID-19

  • Critically ill COVID-19 patients, especially those requiring ICU admission or mechanical ventilation, have a higher risk of bacterial infections 1
  • Mechanical ventilation increases the risk of bacterial infections (aOR 1.41) 1
  • Higher white blood cell counts, higher C-reactive protein levels, or procalcitonin >0.5 ng/mL may indicate a higher possibility of bacterial co-infection 1, 3
  • However, serum biomarkers alone should not be used to decide when to start antibiotics, especially in non-critically ill patients 1

Consequences of Antibiotic Misuse

  • Unnecessary antibiotic use increases the risk of subsequent hospital-acquired pneumonia caused by resistant bacteria 1
  • Bacterial co-infections and secondary infections are associated with significant increases in mortality and longer hospital stays 1
  • The wrong consumption of antibiotics during the COVID-19 pandemic has disastrous effects on antimicrobial resistance management and antibiotic stewardship programs 4
  • COVID-19 patients in regions with high antimicrobial resistance may be fighting on two fronts: the virus and multidrug-resistant bacteria 4

Recommendations for Antibiotic Stewardship

  • Prescribing antibiotics in COVID-19 patients should adhere to the principles of antimicrobial stewardship 1
  • Comprehensive evaluation for bacterial co-infection, including clinical symptoms, microbiology evidence, and inflammatory biomarkers, is crucial 1
  • Antibiotics should be de-escalated or discontinued based on identified pathogens and susceptibility testing results 1
  • Current control policies to manage antimicrobial resistance and prioritization of antibiotic stewardship plans are mandatory during this pandemic 4

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Antibiotic Use in COVID-19 Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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