What are the potential side effects of Omega 3 (omega-3) fatty acids?

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Omega-3 Side Effects

Omega-3 fatty acids are generally well-tolerated with predominantly mild gastrointestinal side effects and no serious adverse effects reported in clinical trials, though prescription formulations at higher doses (1.8-4 g daily) carry an increased risk of atrial fibrillation. 1, 2

Common Side Effects

Gastrointestinal Effects (Most Frequent)

  • Mild gastrointestinal symptoms are the most commonly reported adverse effects, including fishy taste (dysgeusia), belching (eructation), and nausea 1, 3
  • Additional GI symptoms include flatulence, transient diarrhea/steatorrhea, fish aftertaste, and abdominal discomfort 1
  • These symptoms occur more frequently with omega-3 supplements compared to placebo but remain mild in severity 1
  • All formulations (monoglycerides, ethyl esters, and triglycerides) produce similar rates of eructation, dysgeusia, abdominal discomfort, nausea, and bloating 4

Dermatological Effects

  • Skin eruption, itchiness, exanthema, or eczema may occur, though less commonly than gastrointestinal symptoms 1

Cardiovascular Concerns

Atrial Fibrillation Risk

  • Prescription omega-3 products at doses of 1.8-4 g daily significantly increase atrial fibrillation risk (3.1% vs 2.1% in the REDUCE-IT trial) 2
  • This risk appears dose-dependent and is particularly relevant with higher-dose prescription formulations 5, 6

Bleeding Risk

  • The theoretical concern about increased bleeding risk has not been substantiated in clinical trials, even when combined with antiplatelet agents (aspirin) or anticoagulants (warfarin) 1, 7
  • Doses up to 4 g daily of omega-3 fatty acids are not associated with increased risk of major bleeding when used concurrently with antiplatelet or anticoagulant agents 1
  • However, shared decision-making discussions are recommended for patients with underlying fibrinogen dysfunction or those taking antiplatelet/anticoagulant agents, with consideration of monitoring PT/aPTT 1
  • One case report documented gastrointestinal bleeding with extremely high intake (20 g daily) combined with cortisone and antibiotics, though this represents an exceptional circumstance 8

Laboratory Abnormalities

Biochemical Changes (Require Monitoring at Higher Doses)

When using higher doses, the following laboratory changes may occur, though mean differences are typically small and may have statistical rather than clinical significance 1:

  • Higher levels of:

    • LDL cholesterol (5-10% increase with omega-3 acid ethyl esters) 5
    • Fasting blood sugar 1
    • Glutamate pyruvate transaminase (GPT) 1
    • Blood urea nitrogen (BUN) 1
  • Lower levels of:

    • Hemoglobin 1
    • Hematocrit 1

Monitoring Recommendations

  • When prescribing higher doses of omega-3 fatty acids, monitor comprehensive metabolic panel, lipid panel, and hematological parameters 1
  • Periodic monitoring of LDL-C is specifically recommended during omega-3 acid ethyl ester therapy 5

Formulation-Specific Considerations

Prescription vs. Non-Prescription Products

  • Non-prescription fish oil products have variable content and quality, with potential for contamination or oxidized lipids that could trigger additional symptoms 2, 3, 7
  • Prescription omega-3 products undergo purification processes that substantially reduce risks of environmental toxins (mercury, polychlorinated biphenyls, dioxins) and hypervitaminosis 7

EPA vs. EPA+DHA Combinations

  • Combining EPA and DHA is associated with higher rates of adverse effects compared with EPA alone 1
  • Pure EPA ethyl ester (icosapent ethyl) specifically causes musculoskeletal pain, peripheral edema, constipation, and gout in addition to the common side effects 2, 3

Safety Profile Summary

No Serious Adverse Effects

  • Meta-analyses consistently report no serious adverse effects with omega-3 fatty acid supplementation 1
  • Numbers of individuals experiencing adverse events are similar between intervention and placebo groups and are negligible 1
  • No increased risk of cancer has been observed 6

Product Quality Considerations

  • If patients report unusual symptoms or poor tolerability, consider switching to pharmaceutical-grade or prescription omega-3 preparations with more consistent content and purity 3
  • Store products in airtight, dark containers and refrigerate after opening to prevent oxidation 1
  • Use products with added antioxidants (including vitamin E) to minimize oxidation 1

Clinical Pitfalls to Avoid

  1. Do not dismiss atrial fibrillation risk when prescribing higher-dose prescription omega-3 products, particularly in patients with existing cardiac arrhythmia risk factors 2, 6

  2. Do not assume all omega-3 products are equivalent—non-prescription supplements lack FDA approval for treating elevated triglycerides and have inconsistent quality 2, 5

  3. Do not withhold omega-3 therapy due to bleeding concerns in patients on anticoagulation—clinical evidence does not support increased bleeding risk at therapeutic doses, though monitoring discussions are appropriate 1

  4. Do not ignore the potential for small but statistically significant laboratory changes when using higher doses—establish baseline values and monitor appropriately 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Omega-3 Fatty Acid Supplementation for Cardiovascular Risk Reduction

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Omega-3 Supplements and Headache Relationship

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Treatment of Hypertriglyceridemia with Omega-3 Fatty Acids

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Safety considerations with omega-3 fatty acid therapy.

The American journal of cardiology, 2007

Research

Gastrointestinal bleeding after high intake of omega-3 fatty acids, cortisone and antibiotic therapy: a case study.

International journal of sport nutrition and exercise metabolism, 2014

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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