What are the most common viruses responsible for hand, foot, and mouth disease (HFMD)?

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Most Common Viruses Causing Hand, Foot, and Mouth Disease

The most common viruses responsible for hand, foot, and mouth disease (HFMD) are coxsackievirus A16 (CV-A16) and enterovirus 71 (EV-A71), though coxsackievirus A6 (CV-A6) has emerged as an increasingly important pathogen causing more severe outbreaks worldwide. 1, 2

Primary Causative Agents

Traditional Pathogens

  • Coxsackievirus A16 (CV-A16) and Enterovirus 71 (EV-A71) have historically been the predominant pathogens causing HFMD outbreaks worldwide 3, 4, 5
  • CV-A16 typically causes milder disease, with patients recovering without special medical attention 5
  • EV-A71 is associated with more severe outbreaks and has been responsible for large HFMD outbreaks with rare but severe cases of rhomboencephalitis, particularly in Asia and more recently in Europe 1

Emerging Pathogen

  • Coxsackievirus A6 (CV-A6) has become a major cause of HFMD outbreaks since 2008, particularly in Finland, Europe, North America, and Asia 6, 4
  • CV-A6 causes more severe disease with unique clinical findings compared to traditional strains, including higher fever, longer disease duration, and more extensive skin manifestations spreading beyond the typical hand-foot-mouth distribution 6
  • This strain affects broader demographics, including adults, which is atypical for traditional HFMD 6

Other Enterovirus Serotypes

  • Coxsackievirus A10 (CV-A10) has been identified as causing more infections in recent epidemiological shifts 2
  • Coxsackievirus A5 (CV-A5) can also cause HFMD, though less commonly 5
  • Other human enterovirus A (HEV-A) serotypes tend to cause only sporadic HFMD cases rather than outbreaks 4

Clinical Significance by Viral Type

EV-A71 carries the highest risk for severe complications, including brain stem encephalitis, meningoencephalitis, acute flaccid paralysis, and pulmonary edema 7, 2

  • Mortality has increased particularly in children under 3 years of age and teenagers with brain stem encephalitis 2
  • Neurological complications such as encephalitis/meningitis and acute flaccid myelitis (AFM) are potential severe outcomes 7

CV-A6 presents with atypical features that distinguish it from classic HFMD:

  • Widespread exanthema beyond classic distribution, involving the legs 7
  • More severe skin manifestations requiring intensive skin care 7
  • Association with onychomadesis (nail shedding) occurring 1-2 months after fever onset 1

Epidemiological Shifts

Recent molecular epidemiology studies reveal important changes in HFMD causative agents 2:

  • A shift from EV-A71 and CV-A16 dominance to increased prevalence of CV-A6 and CV-A10 2
  • Extensive recombination events among enterovirus strains may contribute to faster evolution and extinction of dominant serotypes 2
  • These changes necessitate updated prevention strategies, including consideration of multivalent vaccines combining EV-A71, CV-A16, and CV-A6 4

Important Diagnostic Considerations

Vesicle fluid samples have the highest viral loads and are ideal for testing using reverse transcriptase PCR (RT-PCR) targeting the 5′ non-coding region 7

  • Respiratory samples and stool specimens can also be used for diagnosis 1, 7
  • For neurological presentations, respiratory specimens should always be collected, as some viruses (particularly EV-D68) are rarely detectable in CSF or stool 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Changing Epidemiology of Hand, Foot, and Mouth Disease Causative Agents and Contributing Factors.

The American journal of tropical medicine and hygiene, 2024

Research

Hand-Foot-and-Mouth Disease: Rapid Evidence Review.

American family physician, 2019

Guideline

Diagnosis and Management of Hand, Foot, and Mouth Disease

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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