Squamous Cells in Clean Catch Urine: Clinical Significance and Next Steps
Squamous cells in a clean catch urine specimen do not indicate contamination and should not delay or prevent appropriate evaluation of hematuria. The presence of RBCs requires confirmation with microscopic urinalysis and subsequent risk-stratified workup regardless of squamous cell presence.
Understanding Squamous Cells in Urine
- Squamous cells are present in 94-96% of both catheterized and clean catch urine samples from women and do not predict bacterial contamination 1
- The overall predictive value of squamous cells for bacterial contamination is only 21% in midstream clean catch samples 1
- Squamous cells are normally shed from the urethra, trigone area of the bladder, or cervicovaginal region in women 2
- Laboratory personnel may incorrectly report renal tubular epithelial cells as squamous cells, which can lead to misinterpretation 3
Confirming True Hematuria
Before initiating any workup, confirm true microscopic hematuria with ≥3 RBCs per high-power field on microscopic examination of at least two of three properly collected clean-catch midstream urine specimens 4, 5. This is critical because:
- Dipstick testing has limited specificity (65-99%) and requires microscopic confirmation 4, 5
- The presence of both RBCs and blood on dipstick suggests true hematuria, not a false-positive result 6
- Do not proceed with extensive urologic workup based solely on dipstick results 5
Risk Stratification for Confirmed Hematuria
Once microscopic hematuria is confirmed (≥3 RBCs/HPF on 2 of 3 specimens), stratify patients into risk categories 5:
High-Risk Features (Require Full Urologic Evaluation)
- Age ≥60 years (men) or ≥60 years (women) 5
- Smoking history >30 pack-years 5, 7
25 RBCs per high-power field 5
- Any history of gross hematuria 5, 7
- Occupational exposure to chemicals/dyes (benzenes, aromatic amines) 4, 7
- Irritative voiding symptoms without infection 5, 7
Intermediate-Risk Features
- Women age 50-59 years or men age 40-59 years 5
- Smoking history 10-30 pack-years 5
- 11-25 RBCs per high-power field 5
Low-Risk Features
- Women age <50 years or men age <40 years 5
- Never smoker or <10 pack-years 5
- 3-10 RBCs per high-power field 5
Distinguishing Glomerular from Non-Glomerular Sources
Examine urinary sediment for features suggesting glomerular disease 5, 7:
Glomerular Indicators (Require Nephrology Referral)
- Red blood cell casts (pathognomonic for glomerular disease) 5, 6
- Significant proteinuria (>500 mg/24 hours or protein-to-creatinine ratio >0.5) 5, 6
- Tea-colored or cola-colored urine 5
- Elevated serum creatinine or declining renal function 5, 6
Non-Glomerular Indicators (Proceed with Urologic Evaluation)
Complete Urologic Evaluation for Non-Glomerular Hematuria
Upper Tract Imaging
Multiphasic CT urography is the preferred imaging modality 5, 7, 6, including:
- Unenhanced phase (to detect stones) 6
- Nephrographic phase (to detect renal masses) 6
- Excretory phase (to evaluate collecting systems, ureters, bladder) 6
Lower Tract Evaluation
Cystoscopy is mandatory for 5, 6:
- All patients ≥40 years old with confirmed microscopic hematuria 6
- Younger patients with risk factors (smoking, occupational exposure, irritative symptoms, history of gross hematuria) 6
- Flexible cystoscopy is preferred over rigid cystoscopy as it causes less pain with equivalent or superior diagnostic accuracy 5
Laboratory Testing
- Serum creatinine to assess renal function 5, 7
- Complete urinalysis with microscopy 5
- Urine culture if infection suspected (preferably before antibiotics) 5, 7
- Voided urine cytology in high-risk patients 5, 7
Special Considerations
If Urinary Tract Infection is Suspected
- Obtain urine culture before initiating antibiotics 7
- Treat appropriately and repeat urinalysis 6 weeks after treatment completion to confirm resolution of hematuria 7
- If hematuria persists after documented UTI treatment, proceed with risk-stratified evaluation 7
If Glomerular Disease is Suspected
Refer to nephrology in addition to completing urologic evaluation 5, 6 if:
- Dysmorphic RBCs >80% with or without red cell casts 6
- Proteinuria >500 mg/24 hours 6
- Elevated serum creatinine or declining renal function 6
- Hypertension accompanying hematuria and proteinuria 6
Follow-Up Protocol for Negative Initial Evaluation
If complete urologic workup is negative but hematuria persists 5, 6:
- Repeat urinalysis at 6,12,24, and 36 months 5, 6
- Monitor blood pressure at each visit 5, 6
- Consider repeat complete evaluation within 3-5 years for persistent hematuria in high-risk patients 6
Immediate Re-Evaluation is Warranted If:
- Gross hematuria develops 5, 6
- Significant increase in degree of microscopic hematuria 5, 6
- New urologic symptoms appear 5, 6
- Development of hypertension, proteinuria, or evidence of glomerular bleeding 5, 6
Critical Pitfalls to Avoid
- Never dismiss hematuria because squamous cells are present—squamous cells do not indicate contamination 1
- Never defer evaluation due to anticoagulation or antiplatelet therapy—these medications may unmask underlying pathology but do not cause hematuria 5, 6
- Never ignore gross hematuria, even if self-limited—it carries a 30-40% malignancy risk and mandates urgent urologic referral 5, 6
- Never rely solely on dipstick testing—confirm with microscopic urinalysis showing ≥3 RBCs/HPF before initiating workup 4, 5
- Never attribute hematuria to a "convenient explanation" like crystals or medication without completing appropriate evaluation 6