What are the common side effects of Mepron (atovaquone) in patients with HIV/AIDS?

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Last updated: January 25, 2026View editorial policy

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Mepron (Atovaquone) Side Effects in HIV/AIDS Patients

The most common side effects of Mepron (atovaquone) are gastrointestinal disturbances—particularly diarrhea (19-42%), nausea (21-26%), and vomiting (14%)—along with rash (23-39%), which collectively affect the majority of patients but rarely require treatment discontinuation. 1

Most Frequent Adverse Reactions

Gastrointestinal Effects

  • Diarrhea occurs in 19-42% of patients, making it the most common gastrointestinal side effect, though it leads to discontinuation in only 3-4% of cases 1
  • Nausea affects 21-26% of patients and causes treatment discontinuation in approximately 3-4% 1
  • Vomiting occurs in 14% of patients receiving atovaquone for PCP treatment 1

Dermatologic Reactions

  • Rash develops in 23-39% of patients, with higher rates observed in prophylaxis trials (39-46%) compared to treatment trials (23%) 1
  • Rash leads to discontinuation in approximately 6% of patients, though it is typically not severe 1
  • The rash is generally maculopapular in nature 1

Other Common Side Effects (≥10% incidence)

  • Headache affects 16-28% of patients 1
  • Fever occurs in 14-25% 1
  • Additional reactions include insomnia (10%), rhinitis (24%), pruritus, sweating, flu syndrome, sinusitis, depression, and myalgia 1

Serious but Less Common Adverse Reactions

Hepatotoxicity

  • Cases of cholestatic hepatitis, elevated liver enzymes, and fatal liver failure have been reported, though the exact incidence is not well-defined 1
  • In comparative trials, 2% of atovaquone-treated patients discontinued therapy due to ALT/AST elevations, compared to 7% with TMP-SMX 1
  • Patients with severe hepatic impairment require close monitoring 1

Hypersensitivity Reactions

  • Rare but serious hypersensitivity reactions can occur, including angioedema, bronchospasm, throat tightness, and urticaria 1
  • These reactions contraindicate future use of atovaquone 1

Comparative Tolerability Profile

Versus TMP-SMX

  • Atovaquone demonstrates superior tolerability compared to TMP-SMX, with only 9% of patients discontinuing atovaquone versus 24% discontinuing TMP-SMX due to adverse reactions 1
  • Rash occurs less frequently with atovaquone (23%) than TMP-SMX (34%) 1
  • However, gastrointestinal side effects (nausea, diarrhea, vomiting) are more common with atovaquone 1

Versus Pentamidine

  • Atovaquone has markedly better tolerability than IV pentamidine, with only 7% discontinuation rate versus 41% for pentamidine 1
  • Fewer patients receiving atovaquone reported adverse reactions overall (63% vs 72%) 1

Versus Dapsone

  • Treatment discontinuation rates are similar between atovaquone (20%) and dapsone (43%) in prophylaxis settings among patients not previously taking either medication 1
  • Gastrointestinal reactions are more common with atovaquone 1

Critical Clinical Considerations

Absorption-Related Issues

  • Failure to take atovaquone with food significantly reduces absorption and may result in subtherapeutic drug levels, potentially limiting clinical response 1
  • Food increases atovaquone bioavailability by 1.4-fold 2
  • More than half (58%) of immunocompromised patients achieve plasma concentrations below the therapeutic threshold (Cmin <15 μg/mL), demonstrating unpredictable and highly variable absorption 3

Drug Interactions

  • Atovaquone concentrations are decreased by concurrent use of rifampin, benzodiazepines, opiates, cephalosporins, and acyclovir 2
  • Concentrations are increased by fluconazole and prednisone 2
  • Atovaquone does not undergo significant CYP450 metabolism, avoiding many common antiretroviral drug interactions 4

Pediatric Considerations

  • Adverse reactions appear less frequent in HIV-infected children (approximately 15%) compared to adults (40-65%) 2
  • The most common pediatric adverse reactions are cutaneous (82% of reactions) followed by hematologic (18%) 2

Common Pitfalls to Avoid

  • Never administer atovaquone without food—this is the single most important factor affecting therapeutic success, as inadequate absorption leads to treatment failure 1
  • Do not use atovaquone in patients with severe gastrointestinal disorders that limit oral medication absorption; consider alternative agents 1
  • Monitor liver function in patients with pre-existing hepatic impairment given reports of hepatotoxicity 1
  • Recognize that most adverse reactions occur after the first week of therapy 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Management of Vancomycin and Linezolid in HIV Patients

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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